Hg_chrom1_TN10mRNA_1259
Organism: Heterodera glycines Gene Locus: chr1:13612440-13614543 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.177 | 0.964 | 0.748 | 0.522 | 1.05 | 0.631 | 0.602 | 1.499 | 1.596 | 0.548 | 1.701 | 1.807 | 0.834 | 1.229 | 0.964 | 0.79 | 1.095 | 2.595 | 1.205 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1202
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.825
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.030
|
0.120
|
0.008
|
0.126
|
0.410
|
0.467
|
0.214
|
0.008
|
0.504
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003039
|
2.000
|
1.000
|
Hsc_gene_2647.t1
|
Hsc_gene_2647.t1
|
— |
O01634.1 Innexin-12 [Caenorhabditis elegans]
|
KAI1709291.1 innexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.867|GO:0005575_0.844|GO:0110165_0.844|GO:0009987_0.706|GO:0030054_0.556|GO:0065007_0.545|GO:0006810_0.544|GO:0051179_0.544|GO:0051234_0.544|GO:0003674_0.542|GO:0016020_0.531|GO:0050789_0.514|GO:0071944_0.510
|
IPR000990+4-390_12-388_18-382_40-51_68-77_112-134_202-216_250-259_274-290+
|
— |
PF00876+18-382+Innexin
|
— |
PTHR11893+4-390+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
394-415
|
1.000
|
1-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
47958.780
|
8.368
|
7.500
|
19.277
|
15.181
|
40.000
|
60.000
|
10.843
|
8.434
|
46.506
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
666.690
|
508.290
|
1682.691
|
1109.203
|
926.107
|
901.454
|
452.360
|
1032.728
|
53.280
|
396.997
|
249.690
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.499
|
0.988
|
-0.493
|
-0.293
|
— |
-0.986
|
— |
-1.048
|
-3.025
|
4.574
|
— | — | — |
No JSON data available for plots.