Hg_chrom1_TN10mRNA_1260
Organism: Heterodera glycines Gene Locus: chr1:13616150-13618101 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 1.11 | 0.477 | 0.823 | 0.398 | 0.734 | 0.938 | 0.597 | 1.909 | 1.613 | 0.506 | 1.264 | 2.121 | 0.918 | 0.877 | 1.466 | 1.017 | 1.013 | 1.102 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1203
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.064
|
0.054
|
0.122
|
0.448
|
0.719
|
0.711
|
0.144
|
0.251
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006000
|
1.000
|
1.000
|
Hsc_gene_2646.t1
|
Hsc_gene_2646.t1
|
— |
Q10000.3 Transmembrane protein 144 homolog [Caenorhabditis elegans]
|
KAI1726172.1 transmembrane family of transporters domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015144|GO:0016020|GO:0034219
|
— |
IPR010651+39-402+|IPR012435+43-138_139-402+
|
— |
PF07857+43-138_139-402+Transmembrane_family,_TMEM144_of_transporters
|
— |
PTHR16119+39-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
45818.630
|
9.255
|
13.500
|
13.842
|
12.411
|
37.947
|
62.053
|
8.831
|
5.012
|
52.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
orange
|
376.517
|
38.846
|
226.595
|
301.418
|
217.337
|
184.775
|
395.771
|
234.327
|
519.390
|
658.067
|
598.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.316
|
2.819
|
0.519
|
-0.505
|
— |
1.110
|
— |
0.894
|
— | — | — | — | — |
No JSON data available for plots.