SCN Proteipedia

Hg_chrom1_TN10mRNA_1263

Organism: Heterodera glycines Gene Locus: chr1:13630920-13639516 Feature type: polypeptide

Protein Sequence

Length: 1,802 (Signal peptide: 1-24)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.839	1.007	1.372	0.191	1.202	1.281	0.687	1.027	1.209	1.087	0.605	0.783	1.541	1.195	1.404	1.054	0.764	1.27	0.427	0.555	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1206	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	cell_membrane	nucleus	RKDSPLAAPIRNRRDRA	—	—	—	—	1-24	0.853	0.999	0.000	0.000	0.215	0.277	0.039	0.209	0.145	0.095	0.227	0.041	0.561	0.283

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006002	1.000	1.000	Hsc_gene_2643.t1	Hsc_gene_2643.t1	—	Q967F4.1 Cadherin-related hmr-1 [Caenorhabditis elegans]	KAI3422308.1 Hmr-1p [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005886\|GO:0007155\|GO:0007156\|GO:0016020	GO:0008150_0.908\|GO:0005575_0.820\|GO:0110165_0.814\|GO:0009987_0.808\|GO:0016020_0.665\|GO:0032501_0.636\|GO:0032502_0.607\|GO:0048856_0.607\|GO:0007275_0.568\|GO:0071944_0.532\|GO:0005886_0.514\|GO:0009653_0.513	IPR002126+480-579_491-577_580-698_606-696_639-658_698-727_699-805_720-803_807-927_812-892_828-925_882-894_949-1031_949-1041_954-1039_1020-1039_1042-1155_1063-1153_1159-1275_1183-1273_1291-1369_1299-1401_1305-1399_1399-1412_1402-1500_1406-1489_1423-1498_1451-1477_1482-1499_1501-1610_1509-1601_1523-1608_1610-1721_1618-1711_1631-1719+\|IPR015919+485-554_574-698_687-808_794-930_927-1041_1029-1157_1151-1267_1269-1401_1395-1500_1488-1611_1604-1714_1714-1773+\|IPR020894+686-696_1029-1039_1389-1399_1488-1498_1709-1719+	SM00112+491-577_606-696_720-803_828-925_954-1039_1063-1153_1183-1273_1305-1399_1423-1498_1523-1608_1631-1719+	PF00028+812-892_949-1031_1291-1369_1406-1489_1509-1601_1618-1711+Cadherin_domain	G3DSA:2.60.40.60:FF:000035+1399-1495+Protocadherin_Fat_3\|G3DSA:2.60.40.60:FF:000092+933-1039+Protocadherin_8\|G3DSA:2.60.40.60:FF:000123+1607-1717+Protocadherin_beta_4	PTHR24026+253-1587+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1802	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.518	201456.430	4.844	-51.500	27.691	10.044	49.057	50.943	12.930	14.761	52.053

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	484.488	1696.899	395.358	372.062	331.127	466.176	304.375	271.935	57.830	637.038	388.806

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.332	-2.326	—	—	0.508	-0.605	-0.880	—	—	—	—	—	—

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