Hg_chrom1_TN10mRNA_1265
Organism: Heterodera glycines Gene Locus: chr1:13657751-13660541 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.15 | 0.352 | 1.038 | 1.434 | 1.268 | 1.05 | 0.86 | 1.147 | 0.959 | 1.043 | 1.518 | 1.195 | 0.827 | 1.536 | 1.475 | 0.987 | 0.652 | 0.331 | 0.19 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1208
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.808
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
82-103
|
0.986
|
28-104
|
0.996
|
— | — |
0.000
|
— | — |
0.216
|
0.149
|
0.021
|
0.545
|
0.197
|
0.315
|
0.551
|
0.042
|
0.546
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006004
|
1.000
|
1.000
|
Hsc_gene_2640.t1
|
Hsc_gene_2640.t1
|
— |
Q92021.1 Nuclear factor 7, brain [Xenopus laevis]
|
KAI1711987.1 zinc finger, c3HC4 type (RING finger) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0046872
|
GO:0005575_0.827|GO:0110165_0.824|GO:0008150_0.815|GO:0005622_0.740|GO:0009987_0.740|GO:0065007_0.687|GO:0050789_0.670|GO:0050794_0.619|GO:0003674_0.610|GO:0043226_0.590|GO:0050896_0.582|GO:0043229_0.569|GO:0016020_0.558|GO:0008152_0.539|GO:0043170_0.539|GO:0005488_0.536|GO:0044238_0.521
|
IPR001841+23-60_23-61+|IPR013083+8-142+|IPR017907+38-47+|IPR018957+23-60+
|
SM00184+23-60+
|
PF00097+23-60+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR23327+9-92+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
99-212;371-465
|
2.000
|
1-98;213-370
|
6yxe_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
51136.090
|
9.767
|
22.000
|
26.667
|
7.097
|
52.903
|
47.097
|
16.129
|
10.538
|
50.108
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
196.960
|
253.539
|
145.622
|
161.176
|
92.320
|
112.705
|
946.011
|
52.880
|
5.529
|
195.959
|
114.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.031
|
-0.791
|
0.256
|
-0.836
|
0.302
|
3.080
|
-1.200
|
4.306
|
— |
5.115
|
— | — | — |
No JSON data available for plots.