SCN Proteipedia

Hg_chrom1_TN10mRNA_1268

Organism: Heterodera glycines Gene Locus: chr1:13668551-13670958 Feature type: polypeptide

Protein Sequence

Length: 475 (Signal peptide: 1-21)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.734	1.567	0.804	0.508	0.596	0.756	0.276	1.158	1.029	1.479	0.574	0.867	1.754	0.931	1.332	1.564	0.828	1.244	2.267	1.238	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1211	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	transmembrane_domain	cell_membrane	nucleus	HRERLSRRNPH,KRVYSRRYSLLRHRARRS	—	—	—	—	1-21	0.975	1.000	4.000	3.000	0.062	0.104	0.044	0.136	0.120	0.238	0.228	0.042	0.781	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003042	2.000	1.000	Hsc_gene_2637.t2	Hsc_gene_2637.t2	—	G5EDN0.1 Acetylcholine-gated chloride channel subunit acc-3 [Caenorhabditis elegans]	KAI3422304.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.962\|GO:0009987_0.924\|GO:0005575_0.914\|GO:0110165_0.912\|GO:0016020_0.862\|GO:0065007_0.842\|GO:0050789_0.806\|GO:0051179_0.775\|GO:0006810_0.774\|GO:0051234_0.774\|GO:0071944_0.772\|GO:0003674_0.763\|GO:0005886_0.762\|GO:0007154_0.753\|GO:0023052_0.745\|GO:0055085_0.692\|GO:0050794_0.689\|GO:0006811_0.684\|GO:0050896_0.683\|GO:0034220_0.650\|GO:0051716_0.637\|GO:0007267_0.626\|GO:0005215_0.609\|GO:0022857_0.609\|GO:0032501_0.603\|GO:0005216_0.594\|GO:0015075_0.594\|GO:0015267_0.594\|GO:0022803_0.594\|GO:0030054_0.574\|GO:0045202_0.569\|GO:0099536_0.569\|GO:0099537_0.569\|GO:0098916_0.568\|GO:0007165_0.566\|GO:0007268_0.566\|GO:0022836_0.562\|GO:0015276_0.541\|GO:0015698_0.541\|GO:0022834_0.541\|GO:0098660_0.540\|GO:0006820_0.538\|GO:0006821_0.537\|GO:0005230_0.522\|GO:0098656_0.510\|GO:0003008_0.502\|GO:0015318_0.501	IPR006028+261-281_287-308_321-342_451-471+\|IPR006029+265-468+\|IPR006201+49-471_54-374_95-111_129-140_175-189_252-264+\|IPR006202+53-256+\|IPR018000+175-189+\|IPR036719+258-473+\|IPR036734+51-255_51-256+\|IPR038050+256-475+	—	PF02931+53-256+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+265-468+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:2.70.170.10:FF:000034+48-255+Ligand-Gated_ion_Channel	PTHR18945+54-374+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-475	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.879	54846.790	9.376	16.500	20.632	15.789	46.316	53.684	12.632	8.000	50.316

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	159.473	126.019	261.296	110.190	23.776	30.880	30.304	119.880	7.248	428.877	248.179

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.822	-0.332	-1.136	-2.240	—	—	1.856	-1.841	-6.031	—	—	—	—

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