SCN Proteipedia

Hg_chrom1_TN10mRNA_1269

Organism: Heterodera glycines Gene Locus: chr1:13671643-13683667 Feature type: polypeptide

Protein Sequence

Length: 2,112 (Signal peptide: 1-22)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.765	0.991	0.818	0.637	2.636	1.056	0.699	1.278	0.852	0.928	1.119	1.225	1.328	0.892	1.285	1.089	0.629	0.517	1.384	0.557	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1212	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.551

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	cytoplasm	chloroplast	RKSK,RKGVEEKEEEERKREL,KKKEEEEEAQRNRKREE,KRREKVQRSAAERLCRR,RKMEDECAKKTEFRKCFR,RKRIEFWDVRKKERWKEKR,KRIEFWDVRKKERWKEKRK,KKKTNEEEGERKCRRKREE,VRKKERWKEKRKREAEREEGNERKEEKEEKEKRREKEKWKEEKKKEEEEEAQRNRKRE	—	—	64-93	0.980	1-22	0.991	1.000	0.000	0.000	0.302	0.104	0.012	0.669	0.237	0.243	0.243	0.043	0.438	0.211

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006006	1.000	1.000	Hsc_gene_2634.t1	Hsc_gene_2635.t1;Hsc_gene_2636.t1	—	Q8MMG9.1 Trehalase [Pimpla hypochondriaca]	KAF7639195.1 Trehalase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004555\|GO:0005515\|GO:0005975\|GO:0005991	GO:0008150_0.914\|GO:0005575_0.885\|GO:0110165_0.885\|GO:0003674_0.795\|GO:0016020_0.677\|GO:0005622_0.671\|GO:0009987_0.649\|GO:0005886_0.648\|GO:0071944_0.648\|GO:0008152_0.625\|GO:0044238_0.571\|GO:0003824_0.563	IPR001452+1884-1945_1887-1944_1890-1936+\|IPR001661+56-613_98-598_243-261_311-328_343-360_380-397_424-440_494-510_582-595+\|IPR006020+1964-2105_1969-2100_1976-2100+\|IPR008928+81-598+\|IPR011993+1968-2107+\|IPR012341+72-619+\|IPR018232+501-510+\|IPR036028+1884-1945+	SM00326+1887-1944+\|SM00462+1964-2105+	PF00018+1890-1936+SH3_domain\|PF00640+1976-2100+Phosphotyrosine_interaction_domain_(PTB/PID)\|PF01204+98-598+Trehalase	—	PTHR23403+56-613+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	610-826;909-1752	3.000	1-609;827-908;1753-2112	2cuc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.750	243321.800	4.657	-113.000	36.553	11.032	56.392	43.608	16.241	20.312	42.566

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2271.932	4427.097	5535.250	2615.815	1001.978	1421.447	1873.422	3177.806	1064.508	1621.517	1382.799

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.897	-0.971	-1.416	0.519	0.409	1.060	-0.621	—	—	—	—	—

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