Hg_chrom1_TN10mRNA_1270
Organism: Heterodera glycines Gene Locus: chr1:13684070-13686908 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 0.978 | 0.935 | 0.806 | 1.012 | 1.677 | 0.779 | 0.467 | 1.973 | 1.389 | 0.496 | 1.649 | 1.298 | 0.809 | 1.812 | 0.801 | 0.843 | 0.779 | 1.078 | 0.275 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1213
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KKSILSALFCCIRNIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.189
|
0.037
|
0.006
|
0.334
|
0.465
|
0.588
|
0.267
|
0.046
|
0.620
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006007
|
1.000
|
1.000
|
Hsc_gene_2633.t1
|
Hsc_gene_2633.t1
|
— | — |
KAI3422301.1 hypothetical protein GPALN_012826 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
211-214
|
1.000
|
1-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
24207.970
|
8.027
|
3.000
|
24.299
|
7.944
|
45.794
|
54.206
|
13.084
|
11.215
|
45.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
157.633
|
70.179
|
228.712
|
124.547
|
77.691
|
511.808
|
20.871
|
303.085
|
139.765
|
83.488
|
107.607
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.476
|
0.691
|
-0.768
|
-0.714
|
2.734
|
-4.606
|
-0.862
|
-3.717
|
— | — | — | — | — |
No JSON data available for plots.