Hg_chrom1_TN10mRNA_1272
Organism: Heterodera glycines Gene Locus: chr1:13688887-13691070 Feature type: polypeptideProtein Sequence
Length: 463
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.005 | 0.864 | 1.043 | 1.476 | 1.329 | 1.311 | 1.188 | 0.576 | 0.963 | 1.276 | 1.652 | 0.66 | 0.623 | 2.072 | 0.956 | 0.956 | 0.524 | 0.332 | 0.381 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1215
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
20-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRMARKGKGETEEGKAKRA,KRRTDKSGKRRGKQRGQRRRSTAKRMARKGKGETEEGKAKR
|
— | — | — | — |
1-16
|
0.940
|
1.000
|
0.000
|
0.000
|
0.620
|
0.133
|
0.037
|
0.335
|
0.096
|
0.019
|
0.034
|
0.005
|
0.208
|
0.456
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006009
|
1.000
|
1.000
|
Hsc_gene_2631.t1
|
— | — | — |
KAI3422299.1 hypothetical protein GPALN_012824 [Globodera pallida]
|
WP_155321876
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-463
|
1.000
|
1-144
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
51633.100
|
10.019
|
28.500
|
34.557
|
6.479
|
56.587
|
43.413
|
20.950
|
13.607
|
48.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
4395.925
|
1057.207
|
2764.435
|
2293.364
|
747.587
|
390.172
|
123.281
|
180.534
|
20541.737
|
992.151
|
9370.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.159
|
0.980
|
-0.162
|
-1.649
|
-0.923
|
-1.653
|
-1.214
|
— |
4.256
|
-2.974
|
— | — | — |