Hg_chrom1_TN10mRNA_1273
Organism: Heterodera glycines Gene Locus: chr1:13693472-13697448 Feature type: polypeptideProtein Sequence
Length: 834
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.729 | 0.785 | 0.372 | 1.079 | 1.045 | 0.714 | 1.079 | 1.146 | 1.377 | 0.836 | 1.481 | 2.065 | 0.899 | 1.028 | 1.028 | 0.59 | 0.945 | 1.107 | 0.776 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1216
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
19-41
|
0.690
|
1-26
|
0.923
|
0.669
|
0.000
|
0.000
|
0.288
|
0.232
|
0.160
|
0.398
|
0.441
|
0.332
|
0.282
|
0.092
|
0.412
|
0.494
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006010
|
1.000
|
1.000
|
Hsc_gene_2630.t1
|
Hsc_gene_2630.t1;Hsc_gene_2630.t2
|
— |
Q18673.3 Neprilysin-1 [Caenorhabditis elegans]
|
KAI1732327.1 peptidase family m13 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.817|GO:0005575_0.774|GO:0110165_0.772|GO:0003674_0.710|GO:0016020_0.630|GO:0009987_0.614|GO:0005622_0.575|GO:0008152_0.559|GO:0003824_0.531
|
IPR000718+143-834_155-834_165-832+|IPR008753+166-565+|IPR018497+265-277_623-829_654-670_727-738+|IPR024079+155-834+|IPR042089+192-613+
|
— |
PF01431+623-829+Peptidase_family_M13|PF05649+166-565+Peptidase_family_M13
|
— |
PTHR11733+155-834+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-834
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
94710.200
|
7.234
|
7.000
|
23.501
|
13.669
|
45.803
|
54.197
|
12.710
|
10.791
|
47.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
340.047
|
398.656
|
788.677
|
644.831
|
296.162
|
420.271
|
74.861
|
563.168
|
239.410
|
113.163
|
167.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
0.557
|
-0.183
|
-1.153
|
0.521
|
-2.482
|
— |
-2.771
|
— | — | — | — | — |