Hg_chrom1_TN10mRNA_1274
Organism: Heterodera glycines Gene Locus: chr1:13697444-13698767 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.841 | 0.758 | 2.443 | 0.694 | 1.175 | 0.794 | 0.833 | 1.296 | 1.295 | 0.821 | 1.961 | 1.968 | 1.202 | 1.02 | 0.833 | 0.751 | 0.505 | 0.321 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1217
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_2629
|
— |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.202
|
0.054
|
0.216
|
0.093
|
0.091
|
0.056
|
0.018
|
0.197
|
0.928
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006011
|
1.000
|
1.000
|
Hsc_gene_2629.t1
|
Hsc_gene_2629.t1
|
— | — |
KAH7715890.1 Proteinase inhibitor I2 [Aphelenchus avenae]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.809|GO:0110165_0.809|GO:0008150_0.733|GO:0003674_0.588|GO:0009987_0.572
|
IPR002223+57-114_59-113_59-114+|IPR036880+53-114_54-118+|IPR052861+36-229+
|
SM00131+57-114+
|
PF00014+59-114+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR47248+36-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
27059.370
|
8.026
|
7.000
|
20.417
|
11.667
|
43.333
|
56.667
|
12.083
|
8.333
|
50.417
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
881.284
|
2680.468
|
566.991
|
270.292
|
197.786
|
266.118
|
361.097
|
2311.358
|
193.534
|
1215.174
|
777.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.471
|
-3.447
|
-0.959
|
-0.481
|
0.442
|
0.450
|
3.019
|
-2.538
|
— | — | — | — | — |
No JSON data available for plots.