Hg_chrom1_TN10mRNA_1275
Organism: Heterodera glycines Gene Locus: chr1:13699266-13702044 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 0.631 | 0.881 | 0.802 | 0.872 | 0.845 | 0.738 | 0.872 | 0.991 | 1.545 | 0.94 | 1.71 | 1.561 | 1.081 | 1.107 | 1.274 | 0.89 | 1.38 | 0.596 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
16-36
|
0.999
|
— | — |
0.001
|
— | — |
0.443
|
0.553
|
0.534
|
0.608
|
0.511
|
0.084
|
0.215
|
0.158
|
0.310
|
0.358
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006012
|
1.000
|
1.000
|
Hsc_gene_2628.t1
|
Hsc_gene_2628.t1
|
— |
O24540.1 4-coumarate--CoA ligase [Vanilla planifolia]
|
KAI1727779.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.855|GO:0003674_0.834|GO:0003824_0.688|GO:0008152_0.671|GO:0005575_0.632|GO:0110165_0.632|GO:0005622_0.541|GO:0005737_0.523|GO:0009987_0.521|GO:0016874_0.509|GO:0016405_0.504|GO:0016877_0.504
|
IPR000873+46-376+|IPR025110+427-501+|IPR045851+412-514+
|
— |
PF00501+46-376+AMP-binding_enzyme|PF13193+427-501+AMP-binding_enzyme_C-terminal_domain
|
G3DSA:3.30.300.30:FF:000007+414-514+4-coumarate--CoA_ligase_2
|
PTHR24096+46-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
57081.460
|
8.601
|
12.500
|
23.450
|
9.690
|
43.798
|
56.202
|
13.372
|
10.078
|
51.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1248.186
|
1268.023
|
1013.759
|
812.435
|
886.323
|
903.561
|
1789.457
|
1296.838
|
2861.691
|
325.649
|
1412.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.552
|
-0.779
|
-0.211
|
— | — |
0.997
|
0.418
|
0.607
|
3.017
|
— | — | — | — |
No JSON data available for plots.