Hg_chrom1_TN10mRNA_1276
Organism: Heterodera glycines Gene Locus: chr1:13703267-13704974 Feature type: polypeptideProtein Sequence
Length: 379
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 0.798 | 1.055 | 0.182 | 0.704 | 0.744 | 0.754 | 1.451 | 1.231 | 1.747 | 0.4 | 0.776 | 1.979 | 1.116 | 1.615 | 0.98 | 0.822 | 1.119 | 1.421 | 0.776 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1219
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
37-66
|
0.977
|
— | — |
1-22
|
0.990
|
0.996
|
0.000
|
0.000
|
0.270
|
0.279
|
0.103
|
0.227
|
0.306
|
0.208
|
0.285
|
0.048
|
0.179
|
0.803
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006013
|
1.000
|
1.000
|
Hsc_gene_2627.t1
|
Hsc_gene_2627.t1
|
— |
Q9GUI1.2 N-acylethanolamine-hydrolyzing acid amidase [Caenorhabditis elegans]
|
KAI1721539.1 linear amide c-N hydrolase, choloylglycine hydrolase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005764|GO:0006631|GO:0017064
|
GO:0008150_0.818|GO:0005575_0.687|GO:0110165_0.682|GO:0003674_0.659|GO:0016020_0.621|GO:0005622_0.583|GO:0008152_0.574|GO:0003824_0.571|GO:0043226_0.532|GO:0043229_0.532|GO:0043227_0.531|GO:0009987_0.530|GO:0043231_0.522|GO:0044281_0.505
|
IPR016699+4-375+|IPR029130+29-86+
|
— |
PF15508+29-86+beta_subunit_of_N-acylethanolamine-hydrolyzing_acid_amidase
|
— |
PTHR28583+29-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
6dy3_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
42991.540
|
8.457
|
7.500
|
23.483
|
14.512
|
41.689
|
58.311
|
13.456
|
10.026
|
48.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
572.672
|
2841.653
|
463.906
|
238.750
|
286.621
|
325.184
|
730.226
|
779.088
|
113.447
|
295.821
|
217.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.842
|
-3.711
|
-0.851
|
0.234
|
— |
1.178
|
1.164
|
— | — | — | — | — | — |