Hg_chrom1_TN10mRNA_1278
Organism: Heterodera glycines Gene Locus: chr1:13708668-13711273 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.447 | 0.546 | 0.74 | 0.536 | 0.935 | 0.69 | 0.644 | 1.335 | 1.653 | 0.715 | 1.767 | 1.55 | 0.743 | 1.358 | 1.257 | 0.985 | 0.975 | 1.651 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1221
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.087
|
0.099
|
0.011
|
0.110
|
0.281
|
0.202
|
0.145
|
0.015
|
0.885
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006015
|
1.000
|
1.000
|
Hsc_gene_2625.t1
|
Hsc_gene_2625.t1
|
— |
Q18534.1 Neuropeptide receptor npr-1 [Caenorhabditis elegans]
|
KAI1719803.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.937|GO:0009987_0.907|GO:0065007_0.856|GO:0050789_0.837|GO:0050794_0.818|GO:0050896_0.812|GO:0003674_0.800|GO:0007154_0.781|GO:0023052_0.778|GO:0051716_0.769|GO:0005575_0.763|GO:0110165_0.762|GO:0007165_0.735|GO:0038023_0.715|GO:0060089_0.715|GO:0016020_0.686|GO:0007186_0.677|GO:0004888_0.664|GO:0071944_0.648|GO:0005886_0.647|GO:0004930_0.604|GO:0005488_0.597
|
IPR000276+49-73_64-341_82-103_127-149_167-188_226-249_282-306_324-350+|IPR017452+64-342+
|
— |
PF00001+64-341+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24235+37-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-466
|
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
52446.150
|
10.357
|
27.000
|
18.884
|
11.373
|
43.562
|
56.438
|
12.661
|
6.223
|
49.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
376.049
|
692.417
|
723.877
|
469.082
|
150.704
|
198.720
|
134.649
|
1330.748
|
52.842
|
218.011
|
147.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.165
|
-0.699
|
-0.518
|
-1.670
|
0.414
|
-0.551
|
2.644
|
-3.164
|
— | — | — | — | — |
No JSON data available for plots.