SCN Proteipedia

Hg_chrom1_TN10mRNA_1279

Organism: Heterodera glycines Gene Locus: chr1:13711997-13719496 Feature type: polypeptide

Protein Sequence

Length: 1,264

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.938	0.957	0.834	0.464	2.004	1.319	0.716	0.87	0.721	0.909	0.863	1.21	1.011	1.141	1.582	1.311	0.804	0.827	0.791	0.396	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1222	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.962

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRQK,RVEKRPK,RVRRKRDGR,RRSDTVREEKKRRVM,KRPKASVVPFKVTEWRVRR	30-50	0.994	15-71	0.997	—	—	0.000	—	—	0.286	0.220	0.064	0.615	0.249	0.163	0.324	0.067	0.477	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001078	1.000	4.000	Hsc_gene_2624.t1;Hsc_gene_2624.t2;Hsc_gene_2624.t3;Hsc_gene_2624.t4	Hsc_gene_2624.t3	—	Q9XVN3.1 Apoptotic enhancer 1 protein [Caenorhabditis elegans]	KAI1723887.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0002039\|GO:0005515\|GO:0042981	GO:0008150_0.967\|GO:0009987_0.825\|GO:0065007_0.796\|GO:0050789_0.764\|GO:0050794_0.747\|GO:0050896_0.694\|GO:0005575_0.682\|GO:0110165_0.681\|GO:0048519_0.652\|GO:0048523_0.634\|GO:0005622_0.620\|GO:0016020_0.613\|GO:0043226_0.572\|GO:0003674_0.547\|GO:0043229_0.538\|GO:0005488_0.533\|GO:0005515_0.513	IPR001452+1121-1205_1124-1204_1128-1157+\|IPR002110+998-1083_1023-1052_1023-1055_1056-1081_1056-1085+\|IPR036028+1125-1206+\|IPR036770+970-1215_994-1099+\|IPR047163+701-1211+	SM00248+1023-1052_1056-1085+\|SM00326+1124-1204+	PF00018+1128-1157+SH3_domain\|PF12796+998-1083+Ankyrin_repeats_(3_copies)	—	PTHR24131+701-1211+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-24;233-969;1218-1264	2.000	25-232;970-1217	6dcx_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.588	141599.430	5.061	-29.000	31.804	7.753	55.142	44.858	15.190	16.614	49.604

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	midnightblue	3355.720	7446.147	4205.471	3413.766	2752.401	3518.725	2834.453	4036.883	3133.301	1753.355	2344.761

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.054	-1.262	-0.192	-0.343	0.369	-0.301	—	-0.367	—	—	—	—	—

No JSON data available for plots.

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