Hg_chrom1_TN10mRNA_1280
Organism: Heterodera glycines Gene Locus: chr1:13720396-13722249 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 0.721 | 0.893 | 1.247 | 0.646 | 0.663 | 0.431 | 1.163 | 1.436 | 1.571 | 0.626 | 0.608 | 2.799 | 1.292 | 1.371 | 1.809 | 0.593 | 0.666 | 0.994 | 0.228 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1223
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.681
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — |
0.622
|
0.013
|
0.000
|
— |
0.333
|
0.265
|
0.069
|
0.400
|
0.364
|
0.109
|
0.321
|
0.039
|
0.151
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006016
|
1.000
|
1.000
|
Hsc_gene_2623.t1
|
— | — |
Q9SSE8.1 Probable glycosyltransferase At3g07620 [Arabidopsis thaliana]
|
KAI3422293.1 Exostosin-2 [Globodera pallida]
|
No
|
-0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016757
|
GO:0008150_0.953|GO:0005575_0.920|GO:0009987_0.897|GO:0110165_0.859|GO:0003674_0.819|GO:0008152_0.757|GO:0044238_0.751|GO:0043170_0.748|GO:0009058_0.745|GO:0044237_0.742|GO:0044249_0.735|GO:0009059_0.732|GO:0016020_0.710|GO:0005622_0.669|GO:0019538_0.647|GO:0043226_0.635|GO:0043229_0.632|GO:0005886_0.627|GO:0071944_0.627|GO:0043227_0.617|GO:0003824_0.615|GO:1901135_0.612|GO:0009100_0.608|GO:1901137_0.607|GO:0009101_0.606|GO:0005737_0.604|GO:0016740_0.604|GO:0043231_0.603|GO:0006029_0.600|GO:0006790_0.600|GO:0015012_0.600|GO:0030166_0.600|GO:0044272_0.600|GO:0016757_0.586|GO:0008194_0.582|GO:0005773_0.520|GO:0016758_0.517|GO:0008375_0.514|GO:0015020_0.514|GO:0050508_0.514|GO:0032501_0.513|GO:0012505_0.507
|
IPR004263+285-347+
|
— | — | — |
PTHR11062+285-347+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-387
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
43656.560
|
8.503
|
12.500
|
21.964
|
14.470
|
43.928
|
56.072
|
13.178
|
8.786
|
49.096
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
583.931
|
350.946
|
581.045
|
507.595
|
519.533
|
540.714
|
469.538
|
454.791
|
255.435
|
1079.061
|
726.078
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
0.396
|
— | — | — | — |
-0.358
|
— | — | — | — | — | — |