Hg_chrom1_TN10mRNA_1283
Organism: Heterodera glycines Gene Locus: chr1:13729582-13731190 Feature type: polypeptideProtein Sequence
Length: 402
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.273 | 1.04 | 0.429 | 1.078 | 0.893 | 0.385 | 0.995 | 0.995 | 1.378 | 1.055 | 1.463 | 1.797 | 0.765 | 1.117 | 0.888 | 0.816 | 1.018 | 2.296 | 1.463 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1226
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
23-Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
golgi_apparatus
|
— | — | — | — | — | — |
1-35
|
— |
0.518
|
— |
0.000
|
0.074
|
0.063
|
0.006
|
0.284
|
0.375
|
0.416
|
0.911
|
0.012
|
0.130
|
0.517
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006019
|
1.000
|
1.000
|
Hsc_gene_2620.t1
|
Hsc_gene_2620.t1
|
— |
A7XDQ9.1 Hydroxyproline O-galactosyltransferase GALT2 [Arabidopsis thaliana]
|
KAI1719449.1 galactosyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.943|GO:0008152_0.734|GO:0003674_0.715|GO:0009987_0.704|GO:0009058_0.694|GO:0044238_0.684|GO:0003824_0.633|GO:0044237_0.599|GO:0044249_0.563|GO:0016740_0.556|GO:1901135_0.532|GO:0005575_0.525|GO:0110165_0.521|GO:1901137_0.513|GO:0016757_0.512|GO:0016758_0.512
|
IPR002659+95-320_121-308+
|
— |
PF01762+121-308+Galactosyltransferase
|
— |
PTHR11214+95-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
399-402
|
1.000
|
1-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
47296.220
|
7.727
|
5.000
|
26.617
|
16.418
|
46.766
|
53.234
|
14.428
|
12.189
|
44.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightyellow
|
379.324
|
75.365
|
132.405
|
92.888
|
171.122
|
160.582
|
547.482
|
84.834
|
10.863
|
1177.141
|
677.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
— |
-0.400
|
0.851
|
— |
1.781
|
-1.024
|
2.833
|
-6.923
|
— | — | — | — |