SCN Proteipedia

Hg_chrom1_TN10mRNA_1286

Organism: Heterodera glycines Gene Locus: chr1:13736512-13740307 Feature type: polypeptide

Protein Sequence

Length: 468

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.59	1.391	0.311	0.516	0.534	2.904	1.043	1.389	0.855	0.982	0.389	1.634	0.653	0.616	0.741	1.862	1.051	0.389	0.329	0.88	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1229	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	6-30	0.898	—	—	—	—	0.000	—	—	0.847	0.105	0.010	0.268	0.049	0.059	0.049	0.010	0.067	0.104

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006022	1.000	1.000	Hsc_gene_2617.t1	Hsc_gene_2617.t1	—	L8E946.1 Homeobox protein unc-42 [Caenorhabditis elegans]	KAF7637249.1 Homeobox domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.940\|GO:0032502_0.803\|GO:0009987_0.801\|GO:0048856_0.800\|GO:0032501_0.785\|GO:0065007_0.717\|GO:0050789_0.710\|GO:0050794_0.703\|GO:0003674_0.697\|GO:0005488_0.697\|GO:0097159_0.697\|GO:0007275_0.695\|GO:0048731_0.695\|GO:0003676_0.691\|GO:0003677_0.665\|GO:0043565_0.665\|GO:0003690_0.663\|GO:1990837_0.663\|GO:0005575_0.662\|GO:0008152_0.646\|GO:0019222_0.646\|GO:0044238_0.646\|GO:0080090_0.646\|GO:0031323_0.645\|GO:0044237_0.645\|GO:0009058_0.644\|GO:0009889_0.644\|GO:0031326_0.644\|GO:0044249_0.644\|GO:0043170_0.641\|GO:0060255_0.641\|GO:0110165_0.640\|GO:0006139_0.637\|GO:0016070_0.637\|GO:0019219_0.637\|GO:0051252_0.637\|GO:0090304_0.637\|GO:0009059_0.636\|GO:0010556_0.636\|GO:0006351_0.633\|GO:0006355_0.633\|GO:0010467_0.633\|GO:0010468_0.633\|GO:0032774_0.633\|GO:0034654_0.633\|GO:0141187_0.633\|GO:2001141_0.633\|GO:0043226_0.599\|GO:0005622_0.592\|GO:0043229_0.592\|GO:0007399_0.573\|GO:0000976_0.556\|GO:0001067_0.556\|GO:0030154_0.552\|GO:0048869_0.552\|GO:0048513_0.534\|GO:0016020_0.511\|GO:0006366_0.510\|GO:0006357_0.506	IPR001356+209-269_211-273_212-268_212-270+\|IPR009057+190-271+\|IPR017970+244-267+\|IPR050649+24-444+	SM00389+211-273+	PF00046+212-268+Homeodomain	G3DSA:1.10.10.60:FF:000679+213-272+Homeobox_protein_aristaless	PTHR24329+24-444+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	159-229;415-468	2.000	1-158;230-414	3a01_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.943	49304.430	8.739	12.500	13.889	8.547	50.641	49.359	8.974	4.915	56.838

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	216.271	414.618	878.212	285.533	103.581	138.908	65.217	288.088	34.095	105.305	74.786

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.854	-0.675	-1.512	-1.493	0.437	-1.080	0.955	-2.003	—	—	—	—	—

No JSON data available for plots.

Back to Browser