Hg_chrom1_TN10mRNA_1287
Organism: Heterodera glycines Gene Locus: chr1:13740396-13741885 Feature type: polypeptideProtein Sequence
Length: 265
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.053 | 0.412 | 1.041 | 1.195 | 0.774 | 0.719 | 0.943 | 0.671 | 1.326 | 0.858 | 1.554 | 1.468 | 1.234 | 1.617 | 1.294 | 0.804 | 0.972 | 0.581 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1230
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RQGKARQRREMGR
|
4-37
|
0.933
|
15-35
|
0.999
|
— | — |
0.001
|
— | — |
0.163
|
0.088
|
0.073
|
0.191
|
0.316
|
0.177
|
0.209
|
0.003
|
0.172
|
0.622
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006023
|
1.000
|
1.000
|
Hsc_gene_2616.t1
|
Hsc_gene_2616.t1
|
— | — |
NP_001256135.1 Secreted protein [Caenorhabditis elegans];CAQ35049.1 Secreted protein [Caenorhabditis elegans]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;240-265
|
1.000
|
4-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
29408.890
|
9.738
|
13.500
|
24.906
|
9.434
|
46.415
|
53.585
|
15.472
|
9.434
|
51.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
465.536
|
167.466
|
143.521
|
52.699
|
504.863
|
2346.006
|
36.270
|
716.400
|
8.258
|
542.816
|
313.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.453
|
-1.805
|
-1.335
|
3.227
|
2.232
|
-6.007
|
-1.828
|
-4.159
|
-6.190
|
— | — | — | — |
No JSON data available for plots.