SCN Proteipedia

Hg_chrom1_TN10mRNA_1291

Organism: Heterodera glycines Gene Locus: chr1:13748598-13750881 Feature type: polypeptide

Protein Sequence

Length: 527

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.772	1.103	1.173	0.131	1.107	1.508	0.542	1.233	1.139	1.205	1.15	1.005	0.949	1.277	1.549	0.976	0.747	0.891	1.168	0.726	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1234	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKPR,KKWSVHVLKLSRTKRH	—	—	—	—	—	—	0.000	—	—	0.930	0.029	0.010	0.197	0.020	0.042	0.025	0.005	0.042	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006027	1.000	1.000	Hsc_gene_2611.t1	Hsc_gene_2611.t1	—	Q5ZLM0.1 Parafibromin [Gallus gallus]	KAI1723905.1 parafibromin [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006368\|GO:0016593	GO:0008150_0.870\|GO:0065007_0.765\|GO:0050789_0.755\|GO:0005575_0.736\|GO:0110165_0.736\|GO:0009987_0.730\|GO:0005622_0.701\|GO:0016020_0.675\|GO:0043226_0.665\|GO:0043229_0.652\|GO:0050794_0.650\|GO:0008152_0.644\|GO:0044238_0.639\|GO:0043170_0.632\|GO:0009058_0.631\|GO:0044237_0.628\|GO:0032501_0.617\|GO:0044249_0.613\|GO:0032502_0.612\|GO:0048856_0.612\|GO:0050896_0.612\|GO:0009059_0.611\|GO:0043227_0.611\|GO:0006139_0.607\|GO:0010467_0.603\|GO:0043231_0.602\|GO:0019222_0.592\|GO:0090304_0.592\|GO:0051716_0.591\|GO:0007275_0.590\|GO:0034654_0.587\|GO:0031323_0.582\|GO:0080090_0.580\|GO:0141187_0.578\|GO:0016070_0.577\|GO:0060255_0.577\|GO:0048519_0.574\|GO:0009889_0.570\|GO:0031326_0.567\|GO:0032774_0.565\|GO:0010556_0.564\|GO:0010468_0.562\|GO:0019219_0.549\|GO:0051252_0.546\|GO:0006351_0.543\|GO:2001141_0.538\|GO:0006355_0.537\|GO:0009892_0.537\|GO:0010605_0.535\|GO:0071840_0.532\|GO:0006366_0.530\|GO:0006357_0.525\|GO:0016043_0.525\|GO:0045934_0.523\|GO:0005634_0.514	IPR007852+1-520+\|IPR031336+363-515+\|IPR032041+1-288+\|IPR038103+355-522+	—	PF05179+363-515+RNA_pol_II_accessory_factor,_Cdc73_family,_C-terminal\|PF16050+1-288+Paf1_complex_subunit_CDC73_N-terminal	G3DSA:3.40.50.11990:FF:000002+355-521+protein_CDC73_homolog	PTHR12466+1-520+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	100-363	2.000	1-99;364-527	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.824	60343.530	9.803	17.500	30.740	9.867	52.751	47.249	17.647	13.093	46.679

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	1095.767	1259.229	1124.593	1191.627	1291.648	1046.054	1226.499	1106.236	949.503	989.648	972.443

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.393	-0.217	0.192	—	-0.289	0.241	—	0.291	—	—	—	—	—

No JSON data available for plots.

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