SCN Proteipedia

Hg_chrom1_TN10mRNA_1292

Organism: Heterodera glycines Gene Locus: chr1:13751950-13755034 Feature type: polypeptide

Protein Sequence

Length: 586

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.151	0.952	0.496	0.235	0.796	3.107	1.28	1.195	1.593	0.669	0.646	1.807	0.474	1.28	0.801	1.0	1.091	0.776	0.263	0.502	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1235	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.689

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRTFSDDLNFYPAKRKSN	—	—	—	—	—	—	0.000	—	—	0.780	0.032	0.003	0.514	0.073	0.026	0.104	0.014	0.105	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006028	1.000	1.000	Hsc_gene_2610.t1	Hsc_gene_2610.t1	—	Q32PX7.1 Far upstream element-binding protein 1 [Rattus norvegicus]	KAI1723906.1 KH domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0006355	GO:0008150_0.863\|GO:0009987_0.800\|GO:0003674_0.791\|GO:0005575_0.772\|GO:0005488_0.758\|GO:0110165_0.754\|GO:0065007_0.745\|GO:0050789_0.737\|GO:0050794_0.689\|GO:0097159_0.688\|GO:0003676_0.669\|GO:0008152_0.641\|GO:0005622_0.640\|GO:0044237_0.627\|GO:0009058_0.624\|GO:0043170_0.614\|GO:0009059_0.603\|GO:0044249_0.603\|GO:0019222_0.595\|GO:0060255_0.590\|GO:0031323_0.583\|GO:0010467_0.582\|GO:0044238_0.579\|GO:0009889_0.559\|GO:0016020_0.557\|GO:0010556_0.555\|GO:0031326_0.555\|GO:0010468_0.554\|GO:0043226_0.552\|GO:0043229_0.539\|GO:0006139_0.520\|GO:0080090_0.519\|GO:0003723_0.503\|GO:0016070_0.501\|GO:0090304_0.501	IPR004087+64-136_150-222_247-317_325-396+\|IPR004088+70-133_153-219_252-314_329-391+\|IPR015096+535-569+\|IPR036612+60-150_64-137_144-223_151-250_249-317_251-324_325-417_326-402+	SM00322+64-136_150-222_247-317_325-396+	PF00013+70-133_153-219_252-314_329-391+KH_domain\|PF09005+535-569+Domain_of_unknown_function_(DUF1897)	—	PTHR10288+253-548+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-67;179-586	1.000	68-178	1j4w_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.889	62303.040	8.729	11.000	18.089	6.143	47.952	52.048	10.580	7.509	53.584

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	4750.767	3793.462	3811.992	4676.987	4705.349	3624.697	4411.524	3208.171	4987.015	6457.275	5827.163

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.222	0.165	0.403	—	-0.361	0.294	-0.281	0.602	—	—	—	—	—

No JSON data available for plots.

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