Hg_chrom1_TN10mRNA_1293
Organism: Heterodera glycines Gene Locus: chr1:13755729-13758332 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.521 | 1.469 | 0.729 | 1.026 | 1.331 | 0.549 | 1.058 | 0.684 | 1.377 | 0.903 | 1.471 | 0.962 | 0.851 | 0.863 | 2.115 | 1.072 | 0.583 | 0.148 | 0.283 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1236
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRLSEFSQNPINKKMNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.395
|
0.112
|
0.014
|
0.597
|
0.151
|
0.322
|
0.248
|
0.066
|
0.348
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003043
|
1.000
|
2.000
|
Hsc_gene_2609.t1;Hsc_gene_2609.t2
|
Hsc_gene_2609.t1;Hsc_gene_2609.t2;Hsc_gene_2609.t3
|
— |
A6R7X5.1 Actin cytoskeleton-regulatory complex protein PAN1 [Histoplasma mississippiense (nom. inval.)]
|
KAI1719777.1 cytoskeletal-regulatory complex EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.932|GO:0005575_0.899|GO:0110165_0.899|GO:0009987_0.898|GO:0005622_0.810|GO:0016020_0.764|GO:0043226_0.695|GO:0043229_0.685|GO:0016043_0.677|GO:0071840_0.677|GO:0005737_0.676|GO:0051179_0.661|GO:0043227_0.658|GO:0071944_0.625|GO:0043231_0.615|GO:0051234_0.606|GO:0065007_0.606|GO:0050789_0.601|GO:0006810_0.600|GO:0050794_0.587|GO:0005886_0.582|GO:0016192_0.526|GO:0006996_0.516
|
IPR000261+143-230_166-228_167-209_168-231+|IPR002048+174-209+|IPR011992+122-229+|IPR018247+187-199+
|
SM00027+143-230+
|
PF12763+166-228+Cytoskeletal-regulatory_complex_EF_hand
|
— |
PTHR11216+158-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-113;250-435;483-520
|
2.000
|
114-249;436-482
|
2kgr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
57116.090
|
4.793
|
-15.500
|
26.538
|
6.731
|
59.615
|
40.385
|
12.308
|
14.231
|
55.962
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2035.342
|
3508.387
|
1449.563
|
1198.944
|
1138.650
|
947.996
|
1351.175
|
1643.877
|
1624.233
|
3471.975
|
2680.086
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.505
|
-1.686
|
-0.165
|
— |
-0.250
|
0.521
|
0.689
|
— | — | — | — | — | — |
No JSON data available for plots.