Hg_chrom1_TN10mRNA_1294
Organism: Heterodera glycines Gene Locus: chr1:13758460-13759482 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.453 | 1.364 | 0.431 | 2.5 | 1.923 | 0.67 | 0.625 | 1.111 | 0.845 | 1.42 | 1.103 | 0.521 | 0.481 | 1.276 | 0.446 | 0.615 | 0.663 | 0.0 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1237
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.862
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KKNQRQQHRRERRAKQR,RQQHRRERRAKQREEKRFETKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.957
|
0.189
|
0.013
|
0.256
|
0.027
|
0.076
|
0.029
|
0.004
|
0.029
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006029
|
1.000
|
1.000
|
Hsc_gene_2608.t1
|
Hsc_gene_2608.t1
|
— |
Q642A5.1 DNA polymerase epsilon subunit 3 [Rattus norvegicus]
|
KAI3422283.1 DNA polymerase epsilon subunit 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046982
|
GO:0005575_0.802|GO:0008150_0.796|GO:0110165_0.796|GO:0005622_0.768|GO:0009987_0.680|GO:0043226_0.676|GO:0043229_0.636|GO:0065007_0.605|GO:0016020_0.598|GO:0050789_0.585|GO:0050794_0.543|GO:0043227_0.529
|
IPR003958+9-73+|IPR009072+1-158_7-143+|IPR051377+4-153+
|
— |
PF00808+9-73+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR46172+4-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-160
|
1.000
|
1-80
|
2bym_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
18114.980
|
4.521
|
-10.000
|
39.375
|
4.375
|
60.000
|
40.000
|
16.875
|
22.500
|
44.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1108.861
|
850.455
|
603.834
|
543.032
|
559.329
|
444.821
|
444.597
|
637.718
|
2400.050
|
1519.807
|
1897.054
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.724
|
-0.784
|
— | — |
-0.316
|
— |
0.414
|
-0.379
|
— | — | — | — | — |
No JSON data available for plots.