Hg_chrom1_TN10mRNA_1295
Organism: Heterodera glycines Gene Locus: chr1:13759633-13760931 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 0.85 | 1.148 | 0.458 | 1.495 | 0.937 | 0.435 | 1.163 | 1.698 | 1.347 | 0.856 | 0.977 | 2.307 | 0.575 | 0.881 | 0.997 | 0.436 | 0.906 | 1.533 | 1.173 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1238
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.368
|
0.203
|
0.151
|
0.523
|
0.218
|
0.186
|
0.066
|
0.250
|
0.112
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006030
|
1.000
|
1.000
|
Hsc_gene_2607.t1
|
Hsc_gene_2607.t1
|
— |
P42170.1 Ribonucleoside-diphosphate reductase small chain [Caenorhabditis elegans]
|
KAI3422284.1 Ribonucleotide-diphosphate reductase (RNR), small subunit [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009263|GO:0016491
|
GO:0008150_0.938|GO:0009987_0.809|GO:0005575_0.701|GO:0110165_0.692|GO:0008152_0.676|GO:0005622_0.638|GO:0044238_0.637|GO:0005737_0.629|GO:0006139_0.581|GO:0003674_0.578|GO:0044237_0.578|GO:0044281_0.553|GO:0055086_0.514|GO:0009058_0.511
|
IPR000358+3-274_12-274+|IPR009078+2-274+|IPR012348+1-282+|IPR030475+101-117+|IPR033909+13-274+
|
— |
PF00268+12-274+Ribonucleotide_reductase,_small_chain
|
— |
PTHR23409+3-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
1xsm_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
34974.940
|
4.637
|
-12.500
|
27.575
|
16.611
|
44.518
|
55.482
|
12.292
|
15.282
|
41.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1147.917
|
518.818
|
707.465
|
1676.851
|
1760.490
|
1273.457
|
1289.604
|
861.411
|
550.838
|
1575.972
|
1136.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.218
|
1.556
|
1.354
|
— |
-0.452
|
— |
-0.674
|
0.725
|
— |
1.740
|
— | — | — |
No JSON data available for plots.