Hg_chrom1_TN10mRNA_1297
Organism: Heterodera glycines Gene Locus: chr1:13764168-13766208 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 1.344 | 1.051 | 0.613 | 1.407 | 1.595 | 0.37 | 0.667 | 0.988 | 1.742 | 1.481 | 1.83 | 0.617 | 0.855 | 1.27 | 0.635 | 0.656 | 0.471 | 0.684 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1240
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.361
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.099
|
0.012
|
0.557
|
0.053
|
0.095
|
0.138
|
0.011
|
0.067
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006032
|
1.000
|
1.000
|
Hsc_gene_2605.t1
|
Hsc_gene_2605.t1
|
— |
Q5RKQ0.1 Pre-mRNA-splicing factor SPF27 [Danio rerio]
|
KAI1719754.1 breast carcinoma amplified sequence 2 (BCAS2) domain-containing protein [Ditylenchus destructor];KAI1719755.1 breast carcinoma amplified sequence 2 (BCAS2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006397
|
GO:0005575_0.932|GO:0110165_0.928|GO:0008150_0.927|GO:0005622_0.901|GO:0043226_0.851|GO:0016020_0.848|GO:0043229_0.840|GO:0005737_0.802|GO:0043227_0.792|GO:0050896_0.781|GO:0043231_0.767|GO:0006950_0.728|GO:0043228_0.707|GO:0043232_0.707|GO:0044419_0.693|GO:0005634_0.691|GO:0009605_0.690|GO:0009607_0.690|GO:0043207_0.690|GO:0051707_0.690|GO:0006952_0.686|GO:0098542_0.685|GO:0009617_0.679|GO:0042742_0.676|GO:0009620_0.674|GO:0050832_0.673|GO:0005829_0.654|GO:0031974_0.617|GO:0043233_0.617|GO:0070013_0.614|GO:0031981_0.612|GO:0005730_0.566
|
IPR008409+10-212_14-214+
|
— |
PF05700+14-214+Breast_carcinoma_amplified_sequence_2_(BCAS2)
|
— |
PTHR13296+10-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
25831.750
|
8.767
|
5.500
|
31.556
|
7.111
|
52.000
|
48.000
|
17.333
|
14.222
|
41.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
2104.605
|
3939.566
|
2306.617
|
1282.543
|
1323.418
|
1225.160
|
1717.267
|
1894.397
|
4121.903
|
982.856
|
2328.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.002
|
-1.756
|
-0.738
|
— | — |
0.499
|
0.523
|
— |
1.961
|
— | — | — | — |
No JSON data available for plots.