SCN Proteipedia

Hg_chrom1_TN10mRNA_1298

Organism: Heterodera glycines Gene Locus: chr1:13768992-13776878 Feature type: polypeptide

Protein Sequence

Length: 781

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.759	1.132	0.582	0.927	0.811	1.609	0.701	1.344	1.252	1.263	0.795	1.883	1.103	0.616	1.307	1.482	1.008	0.912	1.182	0.565	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1241	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RHRR,RKFLNAINEFRRIKW	31-60	0.969	68-109	0.999	—	—	0.000	—	—	0.078	0.137	0.028	0.074	0.232	0.336	0.253	0.006	0.797	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003044	1.000	2.000	Hsc_gene_2602.t2;Hsc_gene_2602.t3	Hsc_gene_2602.t1;Hsc_gene_2602.t2;Hsc_gene_2602.t3;Hsc_gene_2602.t4;Hsc_gene_2603.t1	—	Q11122.2 Small conductance calcium-activated potassium channel-like protein 3 [Caenorhabditis elegans]	KAF7637263.1 CaMBD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005516\|GO:0006813\|GO:0015269\|GO:0016020\|GO:0016286	GO:0005575_0.860\|GO:0008150_0.860\|GO:0110165_0.859\|GO:0009987_0.830\|GO:0003674_0.816\|GO:0016020_0.815\|GO:0051179_0.767\|GO:0051234_0.753\|GO:0006810_0.751\|GO:0071944_0.740\|GO:0005886_0.735\|GO:0065007_0.658\|GO:0055085_0.654\|GO:0006811_0.633\|GO:0034220_0.632\|GO:0006812_0.610\|GO:0030001_0.610\|GO:0098660_0.608\|GO:0005215_0.601\|GO:0005216_0.601\|GO:0015075_0.601\|GO:0015267_0.601\|GO:0022803_0.601\|GO:0022857_0.601\|GO:0098655_0.598\|GO:0098662_0.594\|GO:0022836_0.582\|GO:0005261_0.579\|GO:0008324_0.579\|GO:0006813_0.576\|GO:0015318_0.576\|GO:0050789_0.575\|GO:0071805_0.572\|GO:0022890_0.569\|GO:0046873_0.569\|GO:0005267_0.552\|GO:0015079_0.552\|GO:0005622_0.537\|GO:0015276_0.516\|GO:0022834_0.516\|GO:0099094_0.506	IPR004178+565-639_565-642+\|IPR013099+473-550+\|IPR015449+205-698_272-386+\|IPR036122+548-640+	SM01053+565-642+	PF02888+565-639+Calmodulin_binding_domain\|PF03530+272-386+Calcium-activated_SK_potassium_channel\|PF07885+473-550+Ion_channel	—	PTHR10153+205-698+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-12;684-781	1.000	13-683	9o93_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.873	87533.430	9.694	38.500	22.407	10.115	50.064	49.936	14.341	8.067	48.912

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	818.847	1285.975	2216.861	881.320	209.546	136.038	166.196	1467.393	172.777	1066.623	683.546

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.555	-0.682	-1.221	-2.106	-0.609	—	3.333	-3.004	—	—	—	—	—

No JSON data available for plots.

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