Hg_chrom1_TN10mRNA_130
Organism: Heterodera glycines Gene Locus: chr1:889796-892411 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 1.299 | 1.108 | 0.175 | 1.438 | 1.171 | 0.725 | 2.284 | 0.902 | 1.303 | 0.461 | 2.687 | 1.692 | 0.781 | 1.968 | 0.508 | 0.915 | 0.615 | 1.171 | 0.597 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_126
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.696
|
0.180
|
0.157
|
0.492
|
0.033
|
0.058
|
0.048
|
0.010
|
0.083
|
0.378
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001032
|
4.000
|
1.000
|
Hsc_gene_15188.t1
|
— | — |
Q23544.2 Protein adenylyltransferase fic-1 [Caenorhabditis elegans]
|
XP_001943783.2 protein adenylyltransferase Fic [Acyrthosiphon pisum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0005575_0.871|GO:0003674_0.864|GO:0110165_0.857|GO:0016020_0.785|GO:0050896_0.767|GO:0003824_0.766|GO:0006950_0.718|GO:0016740_0.698|GO:0071944_0.666|GO:0016772_0.661|GO:0005886_0.656|GO:0016779_0.655|GO:0005622_0.651|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.634|GO:0005737_0.604|GO:0008152_0.587|GO:0043226_0.579|GO:0043229_0.574|GO:0044238_0.555|GO:0005488_0.544|GO:0043227_0.543|GO:0043231_0.536|GO:0043170_0.528|GO:0051716_0.511|GO:0005515_0.506|GO:0019538_0.502
|
IPR003812+66-164_66-197+|IPR036597+12-196_61-191+|IPR040198+63-190+
|
— |
PF02661+66-164+Fic/DOC_family
|
— |
PTHR13504+63-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52
|
1.000
|
53-197
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
23119.140
|
6.589
|
0.500
|
31.980
|
14.213
|
51.269
|
48.731
|
17.259
|
14.721
|
41.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
56.985
|
8.700
|
65.521
|
46.352
|
37.908
|
52.544
|
24.654
|
38.047
|
78.912
|
87.480
|
83.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.687
|
2.280
|
-0.391
|
— | — |
-1.082
|
-0.572
|
-0.483
|
— | — | — | — | — |
No JSON data available for plots.