Hg_chrom1_TN10mRNA_1301
Organism: Heterodera glycines Gene Locus: chr1:13783986-13786442 Feature type: polypeptideProtein Sequence
Length: 450
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.266 | 1.292 | 1.131 | 0.23 | 1.111 | 1.88 | 1.111 | 0.556 | 1.136 | 1.081 | 1.145 | 1.569 | 1.049 | 0.855 | 0.771 | 1.016 | 0.947 | 0.471 | 0.342 | 0.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1244
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.116
|
0.010
|
0.673
|
0.223
|
0.153
|
0.159
|
0.052
|
0.065
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006035
|
1.000
|
1.000
|
Hsc_gene_2599.t1
|
Hsc_gene_2599.t1
|
— |
Q6GN67.2 Proteasomal ubiquitin receptor ADRM1-A [Xenopus laevis]
|
KAF7637398.1 RPN13_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0005737
|
GO:0008150_0.763|GO:0005575_0.695|GO:0110165_0.684|GO:0005622_0.647|GO:0043226_0.601|GO:0016020_0.600|GO:0043229_0.595|GO:0009987_0.565|GO:0043227_0.533|GO:0005737_0.528|GO:0043231_0.510
|
IPR006773+20-411+|IPR032368+291-389+|IPR038108+278-398+|IPR038633+17-138+|IPR044867+291-402+|IPR044868+16-137_22-127+
|
— |
PF04683+22-127+Proteasome_complex_subunit_Rpn13,_Pru_domain|PF16550+291-389+UCH-binding_domain
|
— |
PTHR12225+20-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
217-450
|
1.000
|
1-216
|
7kxi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
48279.060
|
5.388
|
-4.500
|
25.333
|
5.778
|
51.111
|
48.889
|
12.444
|
12.889
|
53.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
2916.708
|
2453.598
|
3529.652
|
3660.731
|
3741.905
|
3776.531
|
3128.052
|
3801.444
|
2503.848
|
1848.247
|
2129.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.296
|
0.440
|
0.161
|
— | — |
-0.261
|
— | — | — | — | — | — | — |
No JSON data available for plots.