Hg_chrom1_TN10mRNA_1302
Organism: Heterodera glycines Gene Locus: chr1:13788682-13796109 Feature type: polypeptideProtein Sequence
Length: 1,072
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 1.323 | 0.712 | 0.579 | 1.197 | 1.794 | 0.666 | 2.285 | 0.746 | 1.008 | 0.622 | 1.097 | 1.114 | 1.274 | 1.009 | 1.479 | 0.933 | 0.481 | 0.718 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1245
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,KKACPDDYRKLRNLRKKRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.076
|
0.008
|
0.442
|
0.063
|
0.037
|
0.039
|
0.016
|
0.064
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006036
|
1.000
|
1.000
|
Hsc_gene_2598.t1
|
Hsc_gene_2598.t1
|
— |
Q20733.2 Suppressor of activated egl-4 protein 1 [Caenorhabditis elegans]
|
KAI3422269.1 ELM2 and Myb SANT-like domain containing 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.917|GO:0005622_0.860|GO:0016020_0.842|GO:0043226_0.816|GO:0043229_0.794|GO:0043227_0.753|GO:0043231_0.725|GO:0005634_0.698
|
IPR000949+562-655+|IPR001005+672-720_675-718+|IPR009057+671-721+|IPR013087+919-941_919-946_921-941+|IPR017884+671-722+|IPR051066+102-962+
|
SM00355+919-941+|SM00717+672-720+
|
PF00249+675-718+Myb-like_DNA-binding_domain
|
G3DSA:1.10.10.60:FF:000012+671-735+Metastasis-associated_1_family,_member_3
|
PTHR16089+102-962+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-212;387-558;747-987;1043-1072
|
3.000
|
213-386;559-746;988-1042
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
118005.600
|
6.589
|
2.500
|
24.720
|
11.194
|
53.451
|
46.549
|
13.619
|
11.101
|
52.892
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2316.636
|
5455.495
|
4108.552
|
2025.972
|
1140.224
|
1800.098
|
1961.637
|
3772.494
|
1535.727
|
1384.312
|
1449.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.639
|
-1.566
|
-0.911
|
-0.861
|
0.673
|
— |
0.966
|
-0.802
|
— | — | — | — | — |
No JSON data available for plots.