Hg_chrom1_TN10mRNA_1303
Organism: Heterodera glycines Gene Locus: chr1:13796484-13798439 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.242 | 1.147 | 0.67 | 0.971 | 1.369 | 0.867 | 0.243 | 1.834 | 1.05 | 1.03 | 1.142 | 0.944 | 0.467 | 0.892 | 0.902 | 1.353 | 0.809 | 0.747 | 1.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.286
|
0.097
|
0.016
|
0.333
|
0.409
|
0.638
|
0.649
|
0.025
|
0.484
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006037
|
1.000
|
1.000
|
Hsc_gene_2597.t1
|
Hsc_gene_2597.t1
|
— |
Q05974.1 Ras-related protein Rab-1A [Lymnaea stagnalis]
|
KAI3422268.1 Ras- protein Rab-1A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.972|GO:0110165_0.971|GO:0005622_0.842|GO:0016020_0.794|GO:0005737_0.773|GO:0071944_0.759|GO:0005886_0.753|GO:0043226_0.750|GO:0008150_0.747|GO:0043229_0.727|GO:0009987_0.665|GO:0005773_0.635|GO:0043227_0.635|GO:0043231_0.635|GO:0006810_0.577|GO:0051179_0.577|GO:0051234_0.577|GO:0012505_0.565|GO:0031982_0.513
|
IPR001806+2-206_13-173_14-176+|IPR005225+10-167+|IPR027417+5-206_7-187+|IPR050227+10-179+
|
SM00173+9-175+|SM00174+14-176+|SM00175+12-175+|SM00176+17-205+|SM00177+2-176+
|
PF00071+13-173+Ras_family
|
G3DSA:3.40.50.300:FF:000069+5-206+Ras_GTP-binding_protein_YPT1
|
PTHR47977+10-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
180-206
|
1.000
|
1-179
|
3tkl_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
22957.040
|
5.360
|
-1.500
|
23.786
|
9.223
|
49.029
|
50.971
|
11.650
|
12.136
|
50.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
4223.629
|
3391.361
|
4652.342
|
3928.037
|
4267.628
|
5233.821
|
4623.473
|
7210.622
|
5756.764
|
1670.573
|
3421.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.228
|
0.075
|
-0.136
|
0.087
|
0.309
|
-0.168
|
0.358
|
-0.498
|
1.671
|
— | — | — | — |
No JSON data available for plots.