Hg_chrom1_TN10mRNA_1304

Organism: Heterodera glycines    Gene Locus: chr1:13798804-13800496    Feature type: polypeptide

Protein Sequence

Length: 260
FASTA 



  
  

    

      
        

          COMPOSITION
          
            Ala
          
            Asn
          
            Asp
          
            Cys
          
            Glu
          
            Gln
          
            Gly
          
            His
          
            Ile
          
            Leu
          
            Lys
          
            Met
          
            Phe
          
            Pro
          
            Arg
          
            Ser
          
            Thr
          
            Val
          
            Trp
          
            Tyr
          
            Xaa
          
        

      
      
        
ABUNDANCE
          
            
            
              0.984
              
            
            
          
            
            
              0.716
              
            
            
          
            
            
              0.49
              
            
            
          
            
            
              0.398
              
            
            
          
            
            
              0.705
              
            
            
          
            
            
              0.592
              
            
            
          
            
            
              1.648
              
            
            
          
            
            
              2.308
              
            
            
          
            
            
              1.624
              
            
            
          
            
            
              0.52
              
            
            
          
            
            
              1.515
              
            
            
          
            
            
              1.131
              
            
            
          
            
            
              0.427
              
            
            
          
            
            
              1.183
              
            
            
          
            
            
              2.355
              
            
            
          
            
            
              0.44
              
            
            
          
            
            
              0.694
              
            
            
          
            
            
              1.049
              
            
            
          
            
            
              0.296
              
            
            
          
            
            
              0.792
              
            
            
          
            
            
              0.0
              
            
            
          
        

      
    

  

  







  
No JSON data available for plots.



















Features


   TSV







    

      
        

            GENOMICS
          
            Gene Name
          
            Nested Gene
          
            (host gene)
          
            Average
          
            TN7
          
            TN8
          
            TN10
          
            TN20
          
            TN22
          
            MM26
          
            OP50
          
            PA3
          
            X12
          
        

      
      
        

          
            
              
Hg_chrom1_TN10gene_1247

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            EFFECTORS
          
            SCN putative
          
            SCN known (N)
          
            SCN known (P)
          
            BCN known
          
            BCN putative
          
            Effector Islands
          
            Cluster Name
          
            (score)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
5-pJ2_J3_J4

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            SECRETION
          
            Secretion
          
            DL-signals
          
            DL-localization
          
            Localizer
          
            L-nucleus
          
            L-mitochondria
          
            (score)
          
            L-chloroplast
          
            (score)
          
            Signal Peptide
          
            (score_v5)
          
            (score_v6)
          
            (TM_v5)
          
            (TM_v6)
          
            nucleus
          
            mitochondrion
          
            plastid
          
            cytoplasm
          
            endoplasmic_reticulum
          
            lysosome_vacuole
          
            golgi_apparatus
          
            peroxisome
          
            peroxisome
          
            extracellular
          
        

      
      
        

          
            
              
not_secreted

            		
          
            
              
nuclear_localization_signal

            		
          
            
              
cytoplasm

            		
          
            
              
                —
              
            
          
            
              
PDTKRTR,RKGRGGIFKSHSKHRKG,SAGRKVGLIAARRTGRIRGGKPEKRGKE

            		
          
            
              
3-23

            		
          
            
              
0.994

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.000

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.430

            		
          
            
              
0.316

            		
          
            
              
0.071

            		
          
            
              
0.562

            		
          
            
              
0.229

            		
          
            
              
0.163

            		
          
            
              
0.163

            		
          
            
              
0.005

            		
          
            
              
0.093

            		
          
            
              
0.054

            		
          
        

      
    

  




    

      
        

            HOMOLOGY
          
            Orthogroup
          
            (SCN counts)
          
            (BCN counts)
          
            (BCN genes)
          
            BCN hits
          
            C. elegans hits
          
            SP best hit
          
            NR best hit
          
            HGT Donor
          
            HGT Index
          
        

      
      
        

          
            
              
OG0006038

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
Hsc_gene_2596.t1

            		
          
            
              
Hsc_gene_2596.t1

            		
          
            
              
                —
              
            
          
            
              
Q9XVF7.1 Large ribosomal subunit protein uL2 [Caenorhabditis elegans]

            		
          
            
              
KAI3422266.1 60S ribosomal protein L2 [Globodera pallida]

            		
          
            
              
No

            		
          
            
              
0.000

            		
          
        

      
    

  




    

      
        

            FUNCTIONAL
          
            TF
          
            GO terms
          
            DeepGoPlus
          
            InterPro
          
            SMART
          
            Pfam
          
            FunFam
          
            Panther
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015934

            		
          
            
              
GO:0005575_0.878|GO:0110165_0.865|GO:0005622_0.774|GO:0043226_0.707|GO:0043229_0.702|GO:0003674_0.692|GO:0005737_0.689|GO:0005829_0.532|GO:0005840_0.506|GO:0043228_0.506|GO:0043232_0.506

            		
          
            
              
IPR002171+1-256_2-249_11-90+|IPR008991+99-246+|IPR012340+1-86_1-97+|IPR014722+90-169+|IPR014726+170-247+|IPR022666+11-90+|IPR022669+96-231_97-222+|IPR022671+197-208+|IPR023672+1-246+

            		
          
            
              
SM01382+96-231+|SM01383+11-90+

            		
          
            
              
PF00181+11-90+Ribosomal_Proteins_L2,_RNA_binding_domain|PF03947+97-222+Ribosomal_Proteins_L2,_C-terminal_domain

            		
          
            
              
G3DSA:2.30.30.30:FF:000006+90-169+60S_ribosomal_protein_L8|G3DSA:2.40.50.140:FF:000020+1-86+60S_ribosomal_protein_L2|G3DSA:4.10.950.10:FF:000002+170-247+60S_ribosomal_protein_L2

            		
          
            
              
PTHR13691+2-249+

            		
          
        

      
    

  




    

      
        

            SEQUENCE
          
            Protein Sequence
          
        

      
      
        

          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            STRUCTURE
          
            Disorder
          
            (regions)
          
            Ordered
          
            (regions)
          
            PDB
          
            (hit type)
          
        

      
      
        

          
            
              
regions

            		
          
            
              
1-29;126-260

            		
          
            
              
1.000

            		
          
            
              
30-125

            		
          
            
              
9cai_CA

            		
          
            
              
STRUCT_HOMOLOG

            		
          
        

      
    

  




    

      
        

            BIOPHYSICS
          
            Inclusion Body
          
            Mol weight
          
            pI
          
            Net Charge
          
            Charged
          
            Aromatic
          
            Polar
          
            Non-polar
          
            Basic
          
            Acidic
          
            Small
          
        

      
      
        

          
            
              
0.751

            		
          
            
              
28518.160

            		
          
            
              
11.698

            		
          
            
              
44.000

            		
          
            
              
33.077

            		
          
            
              
9.231

            		
          
            
              
45.769

            		
          
            
              
54.231

            		
          
            
              
26.154

            		
          
            
              
6.923

            		
          
            
              
49.615

            		
          
        

      
    

  




    

      
        

            EXPRESSION
          
            Bin13
          
            Bin38
          
            Average
          
            Egg
          
            ppJ2
          
            pJ2
          
            J3
          
            J4
          
            Female
          
            Male
          
            Gland (J2)
          
            Gland (J3)
          
            Gland (J2+J3)
          
        

      
      
        

          
            
              
magenta

            		
          
            
              
sienna3

            		
          
            
              
12268.834

            		
          
            
              
9061.816

            		
          
            
              
9102.551

            		
          
            
              
16996.655

            		
          
            
              
16610.761

            		
          
            
              
12666.893

            		
          
            
              
9380.412

            		
          
            
              
4461.475

            		
          
            
              
14392.632

            		
          
            
              
13526.464

            		
          
            
              
13897.679

            		
          
        

      
    

  




    

      
        

            DGE
          
            Egg vs ppJ2
          
            Egg vs pJ2
          
            ppJ2 vs pJ2
          
            pJ2 vs J3
          
            J3 vs J4
          
            J4 vs F
          
            J4 vs M
          
            F vs M
          
            G(J3 vs J2)
          
            G(J2) vs pJ2
          
            G(J3) vs J3
          
            G(J2) lines
          
            G(J3) lines
          
        

      
      
        

          
            
              
-0.222

            		
          
            
              
0.770

            		
          
            
              
1.009

            		
          
            
              
                —
              
            
          
            
              
-0.376

            		
          
            
              
-0.422

            		
          
            
              
-1.613

            		
          
            
              
1.216

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  











  
No JSON data available for plots.









Back to Browser