Hg_chrom1_TN10mRNA_1306
Organism: Heterodera glycines Gene Locus: chr1:13801331-13805889 Feature type: polypeptideProtein Sequence
Length: 912
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 1.632 | 1.017 | 0.756 | 1.535 | 1.209 | 0.431 | 0.932 | 1.121 | 1.393 | 0.748 | 1.354 | 2.01 | 0.822 | 0.94 | 1.222 | 0.737 | 0.797 | 0.759 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.640
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRKH,KRAEEEKEWPKPTRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.651
|
0.158
|
0.022
|
0.565
|
0.104
|
0.379
|
0.254
|
0.116
|
0.164
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001713
|
1.000
|
3.000
|
Hsc_gene_2595.t1;Hsc_gene_2595.t2;Hsc_gene_2595.t3
|
Hsc_gene_14547.t1;Hsc_gene_14549.t1;Hsc_gene_16844.t1;Hsc_gene_16845.t1;Hsc_gene_16846.t1;Hsc_gene_21476.t1;Hsc_gene_2595.t1;Hsc_gene_2595.t2;Hsc_gene_2595.t3
|
— |
Q6NUV0.2 Rab3 GTPase-activating protein catalytic subunit [Danio rerio]
|
KAI3422265.1 Rab3 GTPase-activating protein catalytic subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0043547
|
GO:0008150_0.767|GO:0009987_0.713|GO:0003674_0.712|GO:0005575_0.698|GO:0110165_0.691|GO:0008152_0.583|GO:0044237_0.560|GO:0065007_0.525|GO:0050789_0.502
|
IPR026147+564-702+|IPR045698+850-911+|IPR045700+13-908+
|
— |
PF13890+564-702+Rab3_GTPase-activating_protein_catalytic_subunit|PF19533+850-911+Rab3_GTPase-activating_protein_catalytic_subunit_C-terminal
|
— |
PTHR21422+13-908+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-912
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
104140.510
|
4.554
|
-39.500
|
26.206
|
11.842
|
50.987
|
49.013
|
11.404
|
14.803
|
47.039
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1584.655
|
2727.333
|
1914.365
|
1551.916
|
1696.274
|
1765.471
|
2208.137
|
2046.990
|
1386.584
|
676.493
|
980.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.741
|
-0.951
|
-0.194
|
— | — |
0.332
|
— |
0.251
|
— | — | — | — | — |
No JSON data available for plots.