Hg_chrom1_TN10mRNA_1308
Organism: Heterodera glycines Gene Locus: chr1:13806837-13808708 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 0.517 | 0.514 | 0.766 | 0.37 | 0.932 | 0.577 | 1.212 | 0.943 | 2.348 | 0.398 | 0.713 | 2.806 | 1.321 | 1.237 | 1.501 | 0.695 | 0.949 | 1.865 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1251
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
7-27
|
0.998
|
35-58
|
0.990
|
— | — |
0.000
|
— | — |
0.206
|
0.159
|
0.018
|
0.180
|
0.804
|
0.159
|
0.360
|
0.006
|
0.227
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006040
|
1.000
|
1.000
|
Hsc_gene_2593.t1
|
Hsc_gene_2593.t1
|
— | — |
KAI1723917.1 ergosterol biosynthesis ERG4/ERG24 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016126|GO:0016628
|
GO:0008150_0.844|GO:0003674_0.720|GO:0005575_0.692|GO:0110165_0.692|GO:0016020_0.666|GO:0008152_0.641|GO:0044238_0.630|GO:0009058_0.624|GO:0005886_0.618|GO:0071944_0.618|GO:0006629_0.585|GO:0008610_0.579|GO:0003824_0.573|GO:1901615_0.569|GO:0008202_0.567|GO:0009987_0.567|GO:1901617_0.565|GO:0006694_0.563|GO:0043226_0.545|GO:0043227_0.535|GO:0016491_0.531|GO:0016627_0.523|GO:0016628_0.523|GO:0005622_0.512|GO:0016125_0.505|GO:0016126_0.501
|
IPR001171+219-493+
|
— |
PF01222+219-493+Ergosterol_biosynthesis_ERG4/ERG24_family
|
— |
PTHR21257+79-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
56249.290
|
10.004
|
24.000
|
16.162
|
16.970
|
36.768
|
63.232
|
11.111
|
5.051
|
45.657
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
297.871
|
348.763
|
402.530
|
262.120
|
283.280
|
302.063
|
300.547
|
333.826
|
61.863
|
419.365
|
266.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.549
|
-0.510
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.