SCN Proteipedia

Hg_chrom1_TN10mRNA_1309

Organism: Heterodera glycines Gene Locus: chr1:13809071-13810103 Feature type: polypeptide

Protein Sequence

Length: 218

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.747	0.747	0.667	0.316	0.612	1.176	0.655	1.606	1.733	1.86	1.112	1.619	1.529	0.97	1.591	0.917	0.752	0.765	1.059	0.405	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1252	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKRGRTDEWMIRKSQK,IRKSQKWRQGQIKDKRTKDGKDKRIKDGKAIAK	42-62	0.948	—	—	—	—	0.000	—	—	0.232	0.071	0.020	0.289	0.187	0.242	0.110	0.007	0.213	0.140

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006041	1.000	1.000	Hsc_gene_2592.t1	Hsc_gene_2592.t1	—	E1BY51.1 Transmembrane protein 17 [Gallus gallus]	KAI1719773.1 putative membrane protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.945\|GO:0110165_0.945\|GO:0008150_0.933\|GO:0016020_0.900\|GO:0009987_0.893\|GO:0005622_0.858\|GO:0043226_0.850\|GO:0043227_0.802\|GO:0051179_0.776\|GO:0051234_0.764\|GO:0071944_0.764\|GO:0005886_0.761\|GO:0006810_0.760\|GO:0071840_0.750\|GO:0016043_0.740\|GO:0051641_0.706\|GO:0006996_0.700\|GO:0044085_0.696\|GO:0051649_0.696\|GO:0033036_0.693\|GO:0070727_0.689\|GO:0008104_0.687\|GO:0022607_0.685\|GO:0016192_0.683\|GO:0046907_0.683\|GO:0032991_0.682\|GO:0030030_0.679\|GO:0120036_0.679\|GO:0033365_0.677\|GO:0048193_0.677\|GO:0007010_0.676\|GO:0007017_0.676\|GO:0007018_0.676\|GO:0051640_0.676\|GO:0051656_0.676\|GO:0030031_0.675\|GO:0070925_0.675\|GO:0120031_0.675\|GO:0031503_0.674\|GO:0051648_0.674\|GO:0051650_0.674\|GO:0000226_0.673\|GO:0010970_0.673\|GO:0030705_0.673\|GO:0099111_0.673\|GO:0001578_0.670\|GO:0005929_0.670\|GO:0006903_0.670\|GO:0030990_0.670\|GO:0035082_0.670\|GO:0035735_0.670\|GO:0042073_0.670\|GO:0042995_0.670\|GO:0044782_0.670\|GO:0048199_0.670\|GO:0060271_0.670\|GO:0061512_0.670\|GO:0097712_0.670\|GO:0098590_0.670\|GO:0120025_0.670\|GO:1905349_0.670\|GO:0065007_0.507	IPR019184+19-123+	—	PF09799+19-123+Predicted_membrane_protein	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	154-218	1.000	1-153	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.497	24912.470	11.097	20.500	25.688	11.468	44.495	55.505	18.349	7.339	40.826

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	139.866	244.404	322.761	130.111	42.623	41.217	15.673	127.212	188.459	124.071	151.666

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.170	-1.047	-1.201	-1.639	—	-1.393	1.523	-2.886	—	—	—	—	—

No JSON data available for plots.

Back to Browser