Hg_chrom1_TN10mRNA_131
Organism: Heterodera glycines Gene Locus: chr1:895500-902758 Feature type: polypeptideProtein Sequence
Length: 264
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.617 | 1.762 | 1.033 | 0.0 | 1.073 | 0.971 | 0.496 | 2.083 | 1.515 | 1.382 | 0.574 | 2.228 | 1.789 | 0.728 | 2.087 | 0.595 | 0.869 | 0.746 | 1.457 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.769
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.550
|
0.191
|
0.161
|
0.468
|
0.071
|
0.045
|
0.125
|
0.063
|
0.097
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001032
|
4.000
|
1.000
|
Hsc_gene_15188.t1
|
— | — |
Q8BIX9.1 Protein adenylyltransferase FICD [Mus musculus]
|
XP_006204808.1 protein adenylyltransferase FICD [Vicugna pacos];XP_031548515.1 protein adenylyltransferase FICD [Vicugna pacos]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0005575_0.860|GO:0110165_0.859|GO:0003674_0.850|GO:0016020_0.793|GO:0003824_0.762|GO:0050896_0.750|GO:0006950_0.712|GO:0016740_0.694|GO:0016772_0.661|GO:0005622_0.657|GO:0016779_0.656|GO:0071944_0.653|GO:0070566_0.650|GO:0070733_0.650|GO:0005886_0.646|GO:0009987_0.637|GO:0043226_0.618|GO:0043229_0.611|GO:0005737_0.601|GO:0008152_0.593|GO:0043227_0.589|GO:0044238_0.574|GO:0043231_0.569|GO:0043170_0.533|GO:0005488_0.523
|
IPR003812+66-199_69-160+|IPR036597+10-196_58-162+
|
— |
PF02661+69-160+Fic/DOC_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-264
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
31255.810
|
10.140
|
10.500
|
30.303
|
14.015
|
51.136
|
48.864
|
18.182
|
12.121
|
40.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
159.223
|
7.956
|
82.440
|
52.519
|
38.217
|
54.251
|
41.547
|
80.272
|
207.486
|
407.036
|
321.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.143
|
2.585
|
-0.543
|
-0.490
|
— | — | — |
-0.808
|
— | — |
-3.083
|
— | — |
No JSON data available for plots.