SCN Proteipedia

Hg_chrom1_TN10mRNA_1312

Organism: Heterodera glycines Gene Locus: chr1:13812375-13817834 Feature type: polypeptide

Protein Sequence

Length: 1,092

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.671	1.193	0.932	0.568	1.374	1.291	0.371	1.145	1.73	1.584	0.916	1.616	1.475	0.652	0.841	0.863	0.796	1.221	1.057	0.646	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1255	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRKL	—	—	—	—	—	—	0.000	—	—	0.429	0.129	0.032	0.614	0.136	0.328	0.293	0.065	0.301	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006044	1.000	1.000	Hsc_gene_2589.t1	Hsc_gene_2589.t1	—	Q6P5F9.1 Exportin-1 [Mus musculus]	KAF7637274.1 Importin N-terminal domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005049\|GO:0006611\|GO:0006886\|GO:0031267	GO:0008150_0.958\|GO:0009987_0.916\|GO:0005575_0.909\|GO:0110165_0.903\|GO:0005622_0.767\|GO:0003674_0.714\|GO:0016020_0.673\|GO:0051179_0.641\|GO:0006810_0.631\|GO:0051234_0.631\|GO:0005488_0.611\|GO:0043226_0.611\|GO:0043229_0.595\|GO:0043227_0.573\|GO:0051641_0.562\|GO:0051649_0.549\|GO:0071705_0.541\|GO:0043231_0.540\|GO:0033036_0.536\|GO:0046907_0.535\|GO:0008104_0.534\|GO:0070727_0.534\|GO:0045184_0.526\|GO:0015031_0.524\|GO:0006886_0.518\|GO:0005737_0.507\|GO:0006611_0.506\|GO:0006913_0.506\|GO:0051168_0.506\|GO:0051169_0.506	IPR001494+43-108_43-109+\|IPR011989+4-1077+\|IPR013598+121-263+\|IPR014877+718-1049_718-1052+\|IPR016024+31-1075+\|IPR040485+494-544+\|IPR041123+351-388+\|IPR041235+415-481+\|IPR045065+20-1071+	SM00913+43-109+\|SM01102+718-1052+	PF03810+43-108+Importin-beta_N-terminal_domain\|PF08389+121-263+Exportin_1-like_protein\|PF08767+718-1049+CRM1_C_terminal\|PF18777+351-388+Chromosome_region_maintenance_or_exportin_repeat\|PF18784+415-481+CRM1_/_Exportin_repeat_2\|PF18787+494-544+CRM1_/_Exportin_repeat_3	G3DSA:1.25.10.10:FF:000022+8-1078+protein_EXPORTIN_1A	PTHR11223+20-1071+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1089-1092	1.000	1-1088	1w9c_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.693	125418.170	5.122	-22.500	25.824	11.172	46.886	53.114	12.454	13.370	43.132

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	6317.800	6396.116	8301.504	7373.381	8034.827	7046.376	8821.146	5158.549	4910.469	4783.061	4837.664

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.147	0.068	—	0.092	-0.174	0.333	-0.555	0.915	—	—	—	—	—

No JSON data available for plots.

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