Hg_chrom1_TN10mRNA_1313
Organism: Heterodera glycines Gene Locus: chr1:13823935-13826316 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.175 | 0.673 | 0.232 | 1.178 | 0.863 | 0.802 | 1.347 | 0.673 | 1.001 | 1.684 | 1.783 | 1.496 | 1.36 | 1.168 | 1.443 | 0.607 | 0.918 | 0.777 | 0.396 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PIKLRKSNWKERNLDIVKKKNKAKKKL
|
— | — |
65-88
|
0.969
|
— | — |
0.000
|
— | — |
0.843
|
0.051
|
0.002
|
0.421
|
0.095
|
0.014
|
0.022
|
0.008
|
0.068
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006045
|
1.000
|
1.000
|
Hsc_gene_2587.t1
|
Hsc_gene_2587.t1
|
— |
A2VDB3.1 RNA-binding protein 42 [Xenopus laevis]
|
KAF7637276.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.500
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.746|GO:0110165_0.746|GO:0005622_0.699|GO:0008150_0.676|GO:0003674_0.671|GO:0043226_0.667|GO:0043229_0.666|GO:0005488_0.633|GO:0016020_0.627|GO:0043227_0.604|GO:0043231_0.604|GO:0097159_0.599|GO:0003676_0.593|GO:0003723_0.550|GO:0005634_0.517|GO:0009987_0.510
|
IPR000504+198-276_199-272_200-270+|IPR012677+148-289+|IPR034215+192-274+|IPR035979+182-278+|IPR050825+183-279+
|
SM00360+199-272+
|
PF00076+200-270+RNA_recognition_motif
|
— |
PTHR47640+183-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-133
|
1.000
|
134-297
|
8r0a_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
33329.180
|
10.550
|
22.000
|
30.303
|
10.438
|
52.525
|
47.475
|
19.529
|
10.774
|
48.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2271.449
|
2110.993
|
1757.197
|
1975.083
|
2161.231
|
1830.225
|
1842.305
|
1928.460
|
3239.542
|
2405.872
|
2763.159
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.494
|
-0.233
|
0.278
|
0.098
|
-0.225
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.