Hg_chrom1_TN10mRNA_1315
Organism: Heterodera glycines Gene Locus: chr1:13834900-13835951 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.139 | 1.113 | 0.141 | 1.088 | 1.465 | 0.68 | 1.02 | 1.542 | 1.434 | 1.113 | 0.24 | 2.041 | 0.628 | 0.75 | 1.399 | 0.803 | 0.866 | 0.942 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1258
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.388
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.456
|
0.023
|
0.512
|
0.108
|
0.204
|
0.110
|
0.137
|
0.113
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006047
|
1.000
|
1.000
|
Hsc_gene_2585.t1
|
Hsc_gene_2585.t1
|
— |
A8Y461.1 Enolase-phosphatase E1 [Caenorhabditis briggsae]
|
KAH7730766.1 Protein F58H1.3 a [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0019509|GO:0043874
|
GO:0005575_0.915|GO:0110165_0.908|GO:0005622_0.868|GO:0005737_0.837|GO:0016020_0.620|GO:0043226_0.610|GO:0043229_0.609|GO:0043227_0.574|GO:0043231_0.566|GO:0005829_0.541|GO:0008150_0.519
|
IPR006439+108-210+|IPR023214+8-227+|IPR023943+6-220_6-240+|IPR036412+3-241+
|
— |
PF00702+6-209+haloacid_dehalogenase-like_hydrolase
|
— |
PTHR20371+4-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
27594.260
|
6.029
|
-1.500
|
25.714
|
12.245
|
51.020
|
48.980
|
13.061
|
12.653
|
46.531
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
369.498
|
330.789
|
455.122
|
542.971
|
560.233
|
496.020
|
551.047
|
574.503
|
177.488
|
166.930
|
171.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.232
|
0.578
|
0.362
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.