Hg_chrom1_TN10mRNA_1317
Organism: Heterodera glycines Gene Locus: chr1:13838975-13839783 Feature type: polypeptideProtein Sequence
Length: 196
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.187 | 1.02 | 0.176 | 1.276 | 4.317 | 0.85 | 3.571 | 1.134 | 1.034 | 0.85 | 1.2 | 1.559 | 1.374 | 0.208 | 0.51 | 0.418 | 0.309 | 0.0 | 0.6 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1260
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.947
|
1.000
|
0.000
|
0.000
|
0.293
|
0.364
|
0.118
|
0.544
|
0.400
|
0.330
|
0.369
|
0.034
|
0.174
|
0.462
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006049
|
1.000
|
1.000
|
Hsc_gene_2583.t1
|
Hsc_gene_2583.t1
|
— |
Q5R8Z6.1 Multiple coagulation factor deficiency protein 2 homolog [Pongo abelii]
|
AVA09708.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.735|GO:0005575_0.690|GO:0110165_0.690|GO:0009987_0.684
|
IPR002048+91-126_94-174_100-174_146-181+|IPR011992+90-174+|IPR018247+104-116_159-171+|IPR052110+13-187+
|
— |
PF13499+94-174+EF-hand_domain_pair
|
— |
PTHR23104+13-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-196
|
0.000
|
— |
8jpg_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
22412.710
|
5.622
|
-6.000
|
27.041
|
14.796
|
55.102
|
44.898
|
13.776
|
13.265
|
39.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
tan
|
439.933
|
428.291
|
359.692
|
483.868
|
683.969
|
870.722
|
699.603
|
589.418
|
484.205
|
18.219
|
217.927
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.482
|
— |
0.537
|
0.468
|
0.363
|
-0.306
|
-0.665
|
0.388
|
4.509
|
— |
5.536
|
— | — |