SCN Proteipedia

Hg_chrom1_TN10mRNA_1319

Organism: Heterodera glycines Gene Locus: chr1:13842599-13845410 Feature type: polypeptide

Protein Sequence

Length: 587

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.327	0.832	0.527	0.529	0.653	2.446	0.365	1.193	0.833	1.335	0.232	1.603	2.461	1.704	1.113	0.9	0.894	0.878	0.655	0.651	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1262	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	scn1120\|AY043253.1#tn8jg10946.t1	scn1120\|AY0432531#tn8jg10946t1	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	—	16-65	0.855	—	—	—	—	0.000	—	—	0.216	0.196	0.002	0.133	0.731	0.223	0.561	0.008	0.250	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006051	1.000	1.000	Hsc_gene_2581.t1	Hsc_gene_2581.t1	—	Q6NRL6.1 E3 ubiquitin-protein ligase synoviolin A [Xenopus laevis]	KAI3422251.1 E3 ubiquitin-protein ligase synoviolin [Globodera pallida]	No	-0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.963\|GO:0009987_0.880\|GO:0005575_0.829\|GO:0110165_0.829\|GO:0065007_0.788\|GO:0050896_0.776\|GO:0050789_0.774\|GO:0003674_0.766\|GO:0050794_0.754\|GO:0051716_0.747\|GO:0016020_0.679\|GO:0071944_0.675\|GO:0008152_0.672\|GO:0005622_0.658\|GO:0007154_0.656\|GO:0023052_0.655\|GO:0043170_0.653\|GO:0005886_0.640\|GO:0007165_0.622\|GO:0044238_0.573\|GO:0003824_0.554\|GO:0140096_0.554\|GO:0016740_0.553\|GO:0016746_0.547\|GO:0004842_0.539\|GO:0016755_0.539\|GO:0019787_0.539\|GO:0006950_0.538\|GO:0019538_0.535	IPR001841+291-334_293-333_293-334+\|IPR013083+267-344+\|IPR050731+4-341+	SM00184+293-333+	PF13639+291-334+Ring_finger_domain	G3DSA:3.30.40.10:FF:000088+266-342+E3_ubiquitin-protein_ligase_synoviolin	PTHR22763+4-341+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	336-587	1.000	1-335	9og0_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.693	66039.890	7.687	8.000	16.184	14.310	41.056	58.944	9.370	6.814	48.893

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2077.846	2777.670	1461.456	1461.488	1795.168	1939.561	3009.385	2052.841	2707.723	1623.195	2087.993

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.157	-1.064	0.109	0.265	0.126	0.644	—	0.694	—	—	—	—	—

No JSON data available for plots.

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