Hg_chrom1_TN10mRNA_1320
Organism: Heterodera glycines Gene Locus: chr1:13846301-13848447 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.914 | 1.218 | 0.346 | 0.657 | 0.833 | 1.038 | 0.737 | 0.476 | 1.587 | 1.705 | 0.577 | 0.98 | 1.786 | 0.87 | 1.361 | 1.293 | 0.742 | 0.866 | 1.648 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
50-70
|
0.999
|
5-30
|
0.995
|
— | — |
0.000
|
— | — |
0.070
|
0.102
|
0.029
|
0.098
|
0.324
|
0.213
|
0.151
|
0.109
|
0.794
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006052
|
1.000
|
1.000
|
Hsc_gene_2580.t1
|
Hsc_gene_2580.t1
|
— |
Q9U320.1 G-protein coupled receptor daf-38 [Caenorhabditis elegans]
|
KAF7637287.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.922|GO:0005575_0.814|GO:0110165_0.809|GO:0009987_0.769|GO:0065007_0.734|GO:0016020_0.695|GO:0050789_0.675|GO:0050896_0.660|GO:0003674_0.632|GO:0051716_0.631|GO:0050794_0.621|GO:0007154_0.577|GO:0023052_0.577|GO:0071944_0.574|GO:0007165_0.566|GO:0005886_0.564
|
IPR000276+75-200_76-97_121-143_158-179_234-411_244-267_351-375_393-419+|IPR017452+48-411+
|
— |
PF00001+75-200_234-411+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24232+27-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
47174.880
|
9.919
|
17.000
|
18.333
|
12.143
|
41.190
|
58.810
|
11.429
|
6.905
|
46.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
78.732
|
60.265
|
296.990
|
82.374
|
43.298
|
48.784
|
96.442
|
214.510
|
34.300
|
2.730
|
16.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.071
|
0.314
|
-1.741
|
-0.960
|
— |
0.994
|
2.037
|
-1.014
|
— | — | — | — | — |
No JSON data available for plots.