Hg_chrom1_TN10mRNA_1322
Organism: Heterodera glycines Gene Locus: chr1:13848753-13849376 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 0.581 | 1.25 | 1.078 | 0.833 | 0.16 | 0.595 | 0.625 | 1.25 | 1.436 | 1.136 | 1.103 | 2.083 | 0.841 | 2.551 | 1.339 | 0.41 | 0.663 | 0.0 | 0.184 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1264
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RKRRRRRGIGM,RRLFPASVILHLRKRRRRR
|
— | — |
4-24
|
1.000
|
— | — |
0.000
|
— | — |
0.544
|
0.454
|
0.041
|
0.501
|
0.131
|
0.020
|
0.029
|
0.160
|
0.034
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003045
|
2.000
|
1.000
|
Hsc_gene_2579.t1
|
— | — |
Q9VIT2.1 Phosphomevalonate kinase [Drosophila melanogaster]
|
KAI1723944.1 phosphomevalonate kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004631|GO:0005737|GO:0006695
|
GO:0008150_0.690|GO:0003674_0.583|GO:0008152_0.554|GO:0044238_0.547|GO:0009058_0.545|GO:0005575_0.531|GO:0110165_0.522
|
IPR005919+11-148_16-140+|IPR027417+6-159+
|
— |
PF04275+16-140+Phosphomevalonate_kinase
|
— |
PTHR13101+11-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
18154.150
|
10.775
|
14.000
|
33.125
|
9.375
|
48.125
|
51.875
|
21.250
|
11.875
|
46.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
664.130
|
3176.887
|
181.189
|
200.760
|
278.359
|
351.688
|
359.249
|
296.331
|
335.953
|
836.930
|
622.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.364
|
-4.121
|
0.258
|
0.440
|
0.352
|
— |
-0.354
|
0.424
|
— | — | — | — | — |
No JSON data available for plots.