Hg_chrom1_TN10mRNA_1323
Organism: Heterodera glycines Gene Locus: chr1:13849571-13850611 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 2.258 | 0.353 | 0.335 | 0.324 | 0.498 | 1.04 | 0.971 | 2.805 | 1.05 | 1.177 | 1.142 | 2.157 | 0.934 | 1.189 | 0.693 | 0.477 | 0.588 | 0.0 | 1.713 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1265
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — |
1-26
|
0.938
|
15-35
|
0.995
|
— | — |
0.002
|
— | — |
0.056
|
0.387
|
0.013
|
0.302
|
0.625
|
0.158
|
0.623
|
0.048
|
0.045
|
0.314
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
F32D8.6
|
P60058.1 Protein transport protein Sec61 subunit gamma [Canis lupus familiaris]
|
KAH7730758.1 Protein transport protein SEC61 gamma subunit [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006605|GO:0006886|GO:0008320|GO:0015031|GO:0016020
|
GO:0005575_0.832|GO:0110165_0.819|GO:0008150_0.677|GO:0016020_0.649|GO:0009987_0.616|GO:0005622_0.604
|
IPR001901+37-98_53-99+|IPR008158+54-100+|IPR023391+46-102_53-99+
|
— |
PF00584+53-99+SecE/Sec61-gamma_subunits_of_protein_translocation_complex
|
G3DSA:1.20.5.820:FF:000001+43-102+Transport_protein_Sec61_subunit_gamma
|
PTHR12309+49-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
9ygy_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
11670.700
|
10.640
|
11.000
|
19.417
|
15.534
|
38.835
|
61.165
|
15.534
|
3.883
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
3020.572
|
1101.925
|
1554.827
|
2471.503
|
2761.660
|
3648.251
|
1589.151
|
1916.502
|
5959.394
|
3104.026
|
4327.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.267
|
1.028
|
0.777
|
0.128
|
0.417
|
-1.188
|
-1.031
|
— | — | — | — | — | — |
No JSON data available for plots.