Hg_chrom1_TN10mRNA_1326
Organism: Heterodera glycines Gene Locus: chr1:13857224-13858983 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 0.639 | 0.687 | 0.355 | 1.833 | 0.705 | 0.409 | 0.859 | 0.84 | 1.161 | 1.093 | 0.809 | 1.145 | 0.925 | 1.894 | 2.111 | 0.845 | 0.885 | 0.529 | 0.202 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKGKKRTRKERAETEEKRK,KKRTRKERAETEEKRKKAD,KRKKADEEKRKRTDQTKRR,RKKADEEKRKRTDQTKRRV,KKADEEKRKRTDQTKRRVF,VREGLRLSSKSRVPPPMASPKHRKYKQRIVRRI
|
— | — |
15-68
|
0.988
|
— | — |
0.000
|
— | — |
0.695
|
0.212
|
0.100
|
0.394
|
0.047
|
0.031
|
0.044
|
0.051
|
0.036
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006055
|
1.000
|
1.000
|
Hsc_gene_2576.t1
|
— | — |
G5EFY4.1 Transcription factor egl-46 [Caenorhabditis elegans]
|
KAI1723950.1 insulinoma-associated protein 1a [Ditylenchus destructor]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0005575_0.948|GO:0110165_0.943|GO:0008150_0.919|GO:0005622_0.906|GO:0009987_0.885|GO:0043226_0.883|GO:0016020_0.877|GO:0043229_0.860|GO:0065007_0.857|GO:0050789_0.838|GO:0050794_0.816|GO:0003674_0.810|GO:0005488_0.810|GO:0043227_0.805|GO:0071840_0.781|GO:0032501_0.778|GO:0043231_0.775|GO:0008152_0.772|GO:0043170_0.772|GO:0005515_0.769|GO:0009058_0.767|GO:0009059_0.767|GO:0010467_0.767|GO:0044237_0.767|GO:0044249_0.767|GO:0050896_0.766|GO:0016043_0.764|GO:0032502_0.764|GO:0048856_0.764|GO:0006139_0.758|GO:0044238_0.758|GO:0019222_0.754|GO:0090304_0.754|GO:0048518_0.751|GO:0031323_0.747|GO:0034654_0.744|GO:0007275_0.743|GO:0060255_0.741|GO:0048519_0.739|GO:0141187_0.739|GO:0016070_0.738|GO:0032774_0.738|GO:0080090_0.738|GO:0048522_0.736|GO:0048731_0.731|GO:0009889_0.727|GO:0031326_0.727|GO:0048869_0.726|GO:0010468_0.723|GO:0010556_0.723|GO:0048523_0.723|GO:0030154_0.722|GO:0006996_0.720|GO:0005634_0.719|GO:0048468_0.714|GO:0019219_0.709|GO:0006351_0.701|GO:0042221_0.701|GO:0051252_0.701|GO:0007399_0.699|GO:0009892_0.697|GO:2001141_0.697|GO:0006355_0.696|GO:0022414_0.695|GO:0022008_0.694|GO:0010605_0.693|GO:0009628_0.692|GO:0031324_0.692|GO:0009653_0.690|GO:0006366_0.688|GO:0007049_0.688|GO:0009890_0.688|GO:0022402_0.688|GO:0030030_0.688|GO:0031327_0.688|GO:0120036_0.688|GO:0010558_0.687|GO:0000280_0.686|GO:0008283_0.686|GO:0048285_0.686|GO:0030182_0.685|GO:0048699_0.685|GO:0006357_0.683|GO:0045892_0.682|GO:0045934_0.682|GO:0051253_0.682|GO:0051301_0.682|GO:1902679_0.682|GO:0000278_0.681|GO:0048609_0.681|GO:0048666_0.681|GO:0051726_0.681|GO:0140014_0.681|GO:1903047_0.681|GO:0048870_0.679|GO:0010564_0.678|GO:0000902_0.677|GO:0031175_0.677|GO:0000122_0.676|GO:0016477_0.675|GO:0007346_0.674|GO:0007610_0.674|GO:0044770_0.674|GO:0001708_0.670|GO:0001764_0.670|GO:0003031_0.670|GO:0003032_0.670|GO:0007096_0.670|GO:0007405_0.670|GO:0007409_0.670|GO:0007411_0.670|GO:0007617_0.670|GO:0009593_0.670|GO:0010458_0.670|GO:0019098_0.670|GO:0031536_0.670|GO:0044772_0.670|GO:0045165_0.670|GO:0045787_0.670|GO:0045931_0.670|GO:0048663_0.670|GO:0048665_0.670|GO:0048667_0.670|GO:0048812_0.670|GO:0048858_0.670|GO:0051606_0.670|GO:0055057_0.670|GO:0060179_0.670|GO:0061351_0.670|GO:0061564_0.670|GO:0070482_0.670|GO:0090068_0.670|GO:0097485_0.670|GO:0106027_0.670|GO:0120039_0.670|GO:1901987_0.670|GO:1901989_0.670|GO:1901990_0.670|GO:1901992_0.670|GO:0008134_0.654|GO:0140297_0.654|GO:0061629_0.650
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-192
|
2.000
|
1-86;193-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
32689.810
|
9.459
|
7.500
|
32.990
|
7.216
|
58.419
|
41.581
|
18.213
|
14.777
|
48.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
158.297
|
84.703
|
62.851
|
23.180
|
9.064
|
10.604
|
112.647
|
25.863
|
57.327
|
526.214
|
325.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.661
|
-2.007
|
-1.330
|
-1.391
|
— |
3.416
|
1.181
|
2.264
|
-3.326
|
— |
-5.792
|
— | — |
No JSON data available for plots.