Hg_chrom1_TN10mRNA_133
Organism: Heterodera glycines Gene Locus: chr1:914598-920562 Feature type: polypeptideProtein Sequence
Length: 1,111
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.444 | 0.851 | 1.552 | 1.245 | 0.877 | 0.782 | 1.08 | 1.34 | 0.949 | 1.336 | 0.9 | 1.475 | 1.09 | 0.79 | 0.849 | 0.93 | 0.641 | 1.108 | 0.847 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_129
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRNPGTGTLYCYDGINKKR
|
— | — | — | — |
1-16
|
0.991
|
0.999
|
0.000
|
0.000
|
0.303
|
0.180
|
0.099
|
0.282
|
0.223
|
0.082
|
0.140
|
0.028
|
0.368
|
0.618
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000233
|
6.000
|
4.000
|
Hsc_gene_22581.t1;Hsc_gene_22632.t1;Hsc_gene_24320.t1;Hsc_gene_24321.t1
|
Hsc_gene_22548.t1;Hsc_gene_22549.t1;Hsc_gene_22582.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.896|GO:0032501_0.743|GO:0032502_0.563|GO:0048856_0.563|GO:0007275_0.539|GO:0005575_0.521|GO:0110165_0.515|GO:0003674_0.502
|
IPR000742+782-793+|IPR001506+603-729+|IPR006026+599-749+|IPR024079+547-762+
|
SM00235+599-749+
|
PF01400+603-729+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+557-748+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
124957.550
|
7.688
|
18.000
|
27.003
|
11.791
|
48.245
|
51.755
|
14.851
|
12.151
|
50.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
salmon
|
172.937
|
7.796
|
8.883
|
4.724
|
13.283
|
52.885
|
27.881
|
82.866
|
0.514
|
681.844
|
389.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.464
|
2.000
|
-0.913
|
0.539
|
-1.427
|
-9.769
|
— |
-5.428
|
— |
6.277
|