Hg_chrom1_TN10mRNA_1330
Organism: Heterodera glycines Gene Locus: chr1:13868578-13869134 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.827 | 0.498 | 0.39 | 0.246 | 0.238 | 0.549 | 0.68 | 1.786 | 0.794 | 1.641 | 0.649 | 2.941 | 1.587 | 1.374 | 0.729 | 0.51 | 0.468 | 1.84 | 0.549 | 1.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.876
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-32
|
0.928
|
— | — | — | — |
0.000
|
— | — |
0.049
|
0.949
|
0.028
|
0.120
|
0.017
|
0.028
|
0.037
|
0.005
|
0.028
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006059
|
1.000
|
1.000
|
Hsc_gene_2571.t1
|
Hsc_gene_2571.t1
|
— |
Q8WSR2.1 Succinate dehydrogenase [ubiquinone] cytochrome b small subunit 2 [Ascaris suum]
|
KAI3422522.1 putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005740|GO:0016020
|
GO:0005575_0.866|GO:0110165_0.861|GO:0016020_0.820|GO:0005622_0.776|GO:0005737_0.776|GO:0003674_0.754|GO:0043226_0.705|GO:0043227_0.703|GO:0043229_0.685|GO:0043231_0.685|GO:0005739_0.581
|
IPR007992+29-139+|IPR034804+15-140+
|
— |
PF05328+28-138+CybS,_succinate_dehydrogenase_cytochrome_B_small_subunit
|
— |
PTHR13337+29-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
5c3j_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
15280.310
|
9.944
|
8.500
|
15.000
|
15.714
|
25.714
|
74.286
|
11.429
|
3.571
|
52.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
lightcyan
|
1225.723
|
999.985
|
1498.887
|
1195.321
|
1404.563
|
1340.134
|
916.899
|
1091.616
|
652.565
|
1705.336
|
1254.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.354
|
0.120
|
-0.218
|
0.200
|
— |
-0.538
|
-0.401
|
— | — | — | — | — | — |
No JSON data available for plots.