SCN Proteipedia

Hg_chrom1_TN10mRNA_1334

Organism: Heterodera glycines Gene Locus: chr1:13877442-13879631 Feature type: polypeptide

Protein Sequence

Length: 389

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.747	1.435	0.982	0.621	1.114	0.791	0.367	0.386	1.314	1.98	0.701	1.059	1.999	0.593	0.892	1.726	0.885	0.935	0.198	0.302	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1276	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.710	0.163	0.008	0.468	0.166	0.233	0.197	0.070	0.072	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003046	1.000	2.000	Hsc_gene_2565.t1;Hsc_gene_2565.t2	Hsc_gene_2565.t1;Hsc_gene_2565.t2	—	—	KAI3422238.1 Ubiquitin elongating factor core [Globodera pallida]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000151\|GO:0034450\|GO:0036503	GO:0008150_0.950\|GO:0005575_0.927\|GO:0110165_0.923\|GO:0016020_0.875\|GO:0005622_0.862\|GO:0065007_0.844\|GO:0050789_0.832\|GO:0005737_0.819\|GO:0043226_0.818\|GO:0003674_0.813\|GO:0043229_0.806\|GO:0043227_0.786\|GO:0043231_0.773\|GO:0032501_0.754\|GO:0008152_0.753\|GO:0005488_0.741\|GO:0044238_0.740\|GO:0005515_0.738\|GO:0043170_0.736\|GO:0048518_0.734\|GO:0019538_0.717\|GO:0019222_0.713\|GO:0060255_0.704\|GO:0080090_0.702\|GO:0009893_0.700\|GO:0043412_0.699\|GO:0036211_0.698\|GO:0010604_0.692\|GO:0003824_0.690\|GO:0009056_0.690\|GO:0009057_0.685\|GO:0051246_0.685\|GO:0009894_0.682\|GO:0030163_0.681\|GO:0006508_0.680\|GO:0043687_0.680\|GO:0032446_0.679\|GO:0070647_0.679\|GO:0016567_0.678\|GO:0016740_0.676\|GO:0051247_0.676\|GO:0010498_0.675\|GO:0042176_0.675\|GO:0051603_0.675\|GO:0000209_0.674\|GO:0009896_0.674\|GO:0043632_0.674\|GO:0019899_0.673\|GO:0140096_0.671\|GO:0006511_0.670\|GO:0008340_0.670\|GO:0019941_0.670\|GO:0030162_0.670\|GO:0032434_0.670\|GO:0032436_0.670\|GO:0035519_0.670\|GO:0043161_0.670\|GO:0045732_0.670\|GO:0045862_0.670\|GO:0051865_0.670\|GO:0061136_0.670\|GO:0070936_0.670\|GO:1901800_0.670\|GO:1903050_0.670\|GO:1903052_0.670\|GO:2000058_0.670\|GO:2000060_0.670\|GO:0016746_0.665\|GO:0016755_0.661\|GO:0019787_0.661\|GO:0061659_0.659\|GO:0004842_0.658\|GO:0061630_0.655\|GO:0031625_0.654\|GO:0044389_0.654\|GO:0034450_0.650\|GO:0051087_0.650\|GO:0005634_0.595	IPR045132+46-363+	—	—	—	PTHR13931+46-363+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-39	1.000	40-389	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	43316.670	4.645	-10.500	21.851	9.254	48.586	51.414	9.769	12.082	49.614

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightgreen	619.344	1162.540	672.749	704.206	743.989	739.280	808.003	783.276	253.090	414.548	345.352

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.018	-0.861	0.174	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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