Hg_chrom1_TN10mRNA_1336
Organism: Heterodera glycines Gene Locus: chr1:13881003-13882526 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 0.885 | 1.258 | 0.477 | 0.98 | 0.71 | 1.195 | 0.346 | 0.846 | 0.888 | 0.734 | 2.442 | 0.961 | 0.865 | 1.342 | 0.593 | 1.191 | 1.206 | 0.799 | 1.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.467
|
0.519
|
0.228
|
0.627
|
0.388
|
0.213
|
0.080
|
0.296
|
0.168
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001079
|
4.000
|
1.000
|
Hsc_gene_2564.t1
|
Hsc_gene_2564.t1
|
— |
P52899.1 Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAI1723963.1 dehydrogenase e1 component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016624
|
GO:0005575_0.811|GO:0110165_0.711|GO:0008150_0.634|GO:0016020_0.616|GO:0005622_0.604|GO:0005737_0.583|GO:0043226_0.538|GO:0043229_0.520|GO:0043227_0.505|GO:0043231_0.501
|
IPR001017+12-243+|IPR029061+12-260+|IPR050642+12-263+
|
— |
PF00676+12-243+Dehydrogenase_E1_component
|
G3DSA:3.40.50.970:FF:000013+5-265+Pyruvate_dehydrogenase_E1_component_subunit_alpha
|
PTHR11516+12-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
288-289
|
1.000
|
1-287
|
6cfo_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
31812.080
|
5.226
|
-3.000
|
24.913
|
10.035
|
42.907
|
57.093
|
12.111
|
12.803
|
55.363
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2001.180
|
1138.415
|
767.662
|
1308.706
|
2433.248
|
1426.621
|
1061.709
|
955.642
|
3549.805
|
2683.309
|
3054.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.798
|
— |
0.878
|
0.863
|
-0.756
|
-0.414
|
-0.684
|
0.296
|
— | — | — | — | — |
No JSON data available for plots.