Hg_chrom1_TN10mRNA_1337
Organism: Heterodera glycines Gene Locus: chr1:13881003-13884407 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.795 | 1.295 | 0.393 | 0.712 | 0.877 | 1.187 | 1.425 | 0.76 | 0.886 | 0.95 | 2.179 | 0.791 | 0.986 | 2.035 | 0.611 | 1.121 | 0.993 | 0.657 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1278
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRHNHPKKSRRHQRHRRG,KRKLLPKIHGKNGVSVKRSGRRDARRRRGRDKPDGPRKPLPSRTLMQKRHNHPKKSRRHQRHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.501
|
0.305
|
0.154
|
0.491
|
0.103
|
0.022
|
0.037
|
0.533
|
0.135
|
0.360
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001079
|
4.000
|
1.000
|
Hsc_gene_2564.t1
|
Hsc_gene_2564.t1
|
— |
P52899.1 Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAI1723963.1 dehydrogenase e1 component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016624
|
GO:0005575_0.832|GO:0110165_0.731|GO:0016020_0.654|GO:0005622_0.651|GO:0008150_0.647|GO:0043226_0.598|GO:0043229_0.581|GO:0043227_0.540|GO:0009987_0.532|GO:0043231_0.530|GO:0003674_0.520|GO:0005737_0.517
|
IPR001017+12-243+|IPR029061+12-260+|IPR050642+12-263+
|
— |
PF00676+12-243+Dehydrogenase_E1_component
|
G3DSA:3.40.50.970:FF:000013+5-265+Pyruvate_dehydrogenase_E1_component_subunit_alpha
|
PTHR11516+12-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
239-351
|
1.000
|
1-238
|
6cfo_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
39303.700
|
10.215
|
22.000
|
30.484
|
10.256
|
48.433
|
51.567
|
19.088
|
11.396
|
52.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2001.180
|
1138.415
|
767.662
|
1308.706
|
2433.248
|
1426.621
|
1061.709
|
955.642
|
3549.805
|
2683.309
|
3054.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.798
|
— |
0.878
|
0.863
|
-0.756
|
-0.414
|
-0.684
|
0.296
|
— | — | — | — | — |
No JSON data available for plots.