Hg_chrom1_TN10mRNA_134
Organism: Heterodera glycines Gene Locus: chr1:944564-946944 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 1.217 | 0.951 | 0.401 | 2.035 | 1.342 | 0.969 | 0.872 | 1.292 | 1.021 | 0.529 | 0.342 | 1.453 | 1.23 | 1.187 | 0.581 | 0.286 | 1.321 | 2.683 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_130
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.252
|
0.554
|
0.028
|
0.742
|
0.122
|
0.187
|
0.091
|
0.046
|
0.147
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002878
|
2.000
|
1.000
|
Hsc_gene_12069.t2
|
— | — |
P34308.4 Calpain clp-1 [Caenorhabditis elegans]
|
KHJ41172.1 calpain family cysteine protease [Trichuris suis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.782|GO:0005575_0.719|GO:0110165_0.711|GO:0003674_0.679|GO:0009987_0.628|GO:0005622_0.590|GO:0005737_0.549|GO:0003824_0.512|GO:0008152_0.508
|
IPR000169+101-112+|IPR001300+53-140_54-141+|IPR022684+38-61_77-99_101-117+|IPR038765+37-141+|IPR050420+13-144+
|
— |
PF00648+54-141+Calpain_family_cysteine_protease
|
— |
PTHR10183+13-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
170-172
|
1.000
|
1-169
|
2p0r_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
19792.150
|
4.290
|
-12.500
|
28.488
|
13.372
|
44.767
|
55.233
|
11.047
|
17.442
|
45.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
101.581
|
1.544
|
0.740
|
0.621
|
0.910
|
11.261
|
3.035
|
1.385
|
1.382
|
436.068
|
249.774
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.646
|
-1.884
|
-3.148
|
— |
-5.681
|
— |
-5.950
|
— | — |
No JSON data available for plots.