Hg_chrom1_TN10mRNA_1341
Organism: Heterodera glycines Gene Locus: chr1:13887859-13892594 Feature type: polypeptideProtein Sequence
Length: 623
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.605 | 1.051 | 0.332 | 1.364 | 1.399 | 0.363 | 1.124 | 1.284 | 1.41 | 0.657 | 1.7 | 1.739 | 0.803 | 0.852 | 1.101 | 0.789 | 1.119 | 0.741 | 0.755 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1281
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.597
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.084
|
0.016
|
0.540
|
0.307
|
0.327
|
0.298
|
0.020
|
0.120
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003047
|
3.000
|
0.000
|
0.000
|
Hsc_gene_2565.t1;Hsc_gene_2565.t2
|
— |
O95155.1 Ubiquitin conjugation factor E4 B [Homo sapiens]
|
KAI3422238.1 Ubiquitin elongating factor core [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000151|GO:0006511|GO:0016567|GO:0034450|GO:0036503
|
GO:0008150_0.877|GO:0005575_0.692|GO:0003674_0.683|GO:0008152_0.679|GO:0044238_0.665|GO:0043170_0.649|GO:0019538_0.635|GO:0110165_0.624|GO:0003824_0.568|GO:0005622_0.549|GO:0016020_0.530|GO:0016740_0.520|GO:0005737_0.517|GO:0009056_0.514|GO:0140096_0.514
|
IPR000608+477-621_485-616_496-615+|IPR016135+472-622_493-621+|IPR019474+24-452+|IPR045132+24-473+
|
SM00212+483-621+
|
PF00179+496-615+Ubiquitin-conjugating_enzyme|PF10408+24-452+Ubiquitin_elongating_factor_core
|
— |
PTHR13931+24-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39
|
1.000
|
40-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
71339.880
|
4.547
|
-27.000
|
24.719
|
12.039
|
49.599
|
50.401
|
10.754
|
13.965
|
46.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1734.990
|
1628.418
|
1043.252
|
1332.037
|
1455.985
|
1356.502
|
1591.076
|
1960.460
|
795.951
|
3105.720
|
2115.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.872
|
-0.427
|
0.461
|
— | — |
0.239
|
0.429
|
— | — | — | — | — | — |
No JSON data available for plots.